FC924958

Overview
NameFC924958
Unique NameFC924958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4185 contig Ccv1_Contig4185:1006..1687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924958 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 2.286e-82
Identity = 150/222 (67.57%), Postives = 177/222 (79.73%), Query Frame = 1
Query:   16 IGAFTAMAQGIFVSCSAGNGGPYADSISNVAPWITTVGAGTLDRDFPTYVRLGNGKNFSGVSLYSRRPSSGSMVPIVDAADVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGW 681
            IGAF AM +GI VSCSAGN GP + S+SNVAPWITTVGAGTLDRDFP    LGNGKNF+GVSL+        ++P + A + S+ ++GNLCMTG+LIP KV GKIV+CDRG N+RV+KG  VK AGGVGMIL NT + GEELVADA LLP+  VGEKAGD I++Y+++DP P A+I   GT +G++PSPVVAAFSSRGPN ITP ILKPDLIAPGVNILA W
Sbjct:  296 IGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRGINARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAW 517          
BLAST of FC924958 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.606e-35
Identity = 94/227 (41.41%), Postives = 133/227 (58.59%), Query Frame = 1
Query:   16 IGAFTAMAQGIFVSCSAGNGGPYADSISNVAPWITTVGAGTLDRDFPTYVRLGNGKNFS--GVSLYSRRPSSGSMVPIVDAA-DVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVE--VKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGW 681
            +G+F AM +GI    SAGN GP + +++N  PWI TV A  +DR F + + LGNGK+FS  G+S++S +  S  +V  VDAA +         C + SL   KV GK++VC  GG      GVE  +K  GG G I+  +D Y +   A   + P+ +V    GD I  YI+S     A +I +  Q+ I P+P VA+FSSRGPNP +  +LKPD+ APG++ILA +
Sbjct:  295 VGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSPKAKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVCRMGGG-----GVESTIKSYGGAGAIIV-SDQYLDN--AQIFMAPATSVNSSVGDIIYRYINSTRSASA-VIQKTRQVTI-PAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAF 511          
BLAST of FC924958 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.314e-32
Identity = 89/228 (39.04%), Postives = 126/228 (55.26%), Query Frame = 1
Query:   16 IGAFTAMAQGIFVSCSAGNGGPYADSISNVAPWITTVGAGTLDRDFPTYVRLGNGKNFSGVSLYSRRPSSGSMVPIVDAADVSST----SSGNLCMTGSLIPAKVAGKIVVCDRG-GNSRVEKGVEVKDAGGVGMILT-NTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGW 681
            IG+F A+ +GI  S SAGNGGP   + ++++PW+ +V A T+DR F T V++GNG++F GVS+           P+V   D+ +T    S+   C   S+ P  + GKIVVC+   G     K ++    G  G+++T NT  Y     AD+  LPS+ +      A   YI S   P ATI    T L    +PVV +FSSRGPN  T +++KPD+  PGV ILA W
Sbjct:  289 IGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSI---NTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLD----GAAGVLMTSNTRDY-----ADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW 503          
The following BLAST results are available for this feature:
BLAST of FC924958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUBL_ARATH2.286e-8267.57Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
XSP1_ARATH1.606e-3541.41Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
CUCM1_CUCME6.314e-3239.04Cucumisin OS=Cucumis melo PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YO15FM1 TF Citrus clementina cDNA clone KN0AAP6YO15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924958 ID=FC924958; Name=FC924958; organism=Citrus clementina; type=EST; length=682bp
GAGACACTGTTCCTCATTGGAGCTTTCACTGCTATGGCACAGGGAATTTT
TGTTTCATGCTCAGCTGGAAATGGTGGGCCTTATGCAGACAGCATATCCA
ACGTTGCACCTTGGATCACCACCGTAGGAGCTGGAACTTTGGACCGTGAT
TTCCCAACCTATGTTAGGCTTGGAAATGGAAAGAACTTCTCTGGCGTCTC
GCTTTATAGTAGGAGACCATCATCTGGTTCCATGGTGCCAATAGTTGATG
CAGCAGATGTTAGTAGTACATCAAGTGGGAATCTCTGCATGACTGGCAGC
TTGATTCCAGCAAAAGTTGCAGGAAAAATTGTGGTCTGTGATCGAGGGGG
AAATTCGAGAGTGGAAAAGGGTGTGGAGGTGAAAGATGCTGGCGGAGTTG
GGATGATTTTAACCAACACTGATTCCTATGGAGAAGAATTAGTTGCAGAT
GCACAGCTCTTGCCTTCAGCAAATGTAGGCGAGAAAGCTGGTGATGCGAT
TAAGAATTACATTTCATCAGATCCTGGACCAATGGCCACAATTATTTCCA
GAGGCACTCAGTTGGGGATCCAACCATCACCAGTTGTGGCAGCATTCAGC
TCTAGAGGTCCAAATCCCATCACTCCAGAAATACTCAAACCAGATCTCAT
AGCACCAGGAGTCAATATCCTAGCTGGCTGGA
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