FC924963

Overview
NameFC924963
Unique NameFC924963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3656 contig Ccv1_Contig3656:1..512. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924963 vs. ExPASy Swiss-Prot
Match: E134_MAIZE (Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.034e-28
Identity = 65/147 (44.22%), Postives = 89/147 (60.54%), Query Frame = 2
Query:    2 DVYAFEAPNLRKLADKVAAAGFYVAVPDFFHGDPYVADGGKPLQEWIKDHGVDKGFEEAKPVIQALKSKGITAIGAAGFCWGAKVVVQLGKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAISEV 442
            DV+ +EAP LR++ DKVA AG++V VPDF  GD    D  K   EW++ H   K  E+AKP+  ALK +G  ++   G+CWG K+ V++GK   ++A  L HP  VT DD+K V+ P+ ILGA+ D  +PP  V  F   L    EV
Sbjct:   76 DVFGYEAPLLRQIVDKVAKAGYFVVVPDFLKGD--YLDDKKNFTEWLEAHSPVKAAEDAKPLFAALKKEG-KSVAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEV 219          
BLAST of FC924963 vs. ExPASy Swiss-Prot
Match: CMBL_XENTR (Carboxymethylenebutenolidase homolog OS=Xenopus tropicalis GN=cmbl PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.500e-15
Identity = 55/170 (32.35%), Postives = 83/170 (48.82%), Query Frame = 2
Query:    2 DVYAFEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGGKP-LQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQLG-KREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAISEVDSFVKIFPKVAPGWTVRYN 499
            D++ ++ PN R +AD + A G+    PDFF G +P+     +    EW++     K  +E   V++ LK +  +  IG  GFCWG  V   L  K   ++A V  +     V+D   +  P   + AE+D + P   V   EE L   S+VD  VK+FPK   G+  R N
Sbjct:   50 DIFGWQLPNTRFMADLLTAHGYITICPDFFVGQEPWKPSNDRSTFTEWLQTRQATKVEKEINVVLKYLKEQCHVKKIGVIGFCWGGVVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEMDHVIPLEQVSLLEEKLKVHSKVDFQVKVFPKQTHGFVHRKN 219          
BLAST of FC924963 vs. ExPASy Swiss-Prot
Match: CMBL_XENLA (Carboxymethylenebutenolidase homolog OS=Xenopus laevis GN=cmbl PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.398e-14
Identity = 52/168 (30.95%), Postives = 80/168 (47.62%), Query Frame = 2
Query:    2 DVYAFEAPNLRKLADKVAAAGFYVAVPDFFHGDPY--VADGGKPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQLG-KREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAISEVDSFVKIFPKVAPGWTVR 493
            D++ ++ PN R +AD + A G+    PDFF G      ++      EW++     K  +E   V++ LK +  +  IG  GFCWG  V   L  K   ++A V  +     V+D   +  P   + AEID + P   V   E+ L   S+VD  +K+FPK   G+  R
Sbjct:   50 DIFGWQLPNTRFMADLLTAHGYITICPDFFVGQESWKPSNDWSTFTEWLQTRQATKVEKEMNVVLKYLKEQCHVKKIGVIGFCWGGVVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEIDHVIPLEQVSLLEQKLKVHSKVDFQIKVFPKQTHGFVHR 217          
BLAST of FC924963 vs. ExPASy Swiss-Prot
Match: AIM2_YEAST (Protein AIM2 OS=Saccharomyces cerevisiae GN=AIM2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.956e-13
Identity = 56/175 (32.00%), Postives = 86/175 (49.14%), Query Frame = 2
Query:    2 DVYAFEAPNLRKLADKVAAAGFYVAVPDFFHGDPYVADGGKPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQ--LGKREFIQAAVLLHPSFVTVDDIKGVE--VPLSILGAEIDRLSPPALVKEFEEAL---NAISEVDSFVKIFPKVAPGWTVRYNV 502
            DVY  +  N+   ADK A+AG+ V VPD   GD   +D       W + H  +   +     ++ LK +     IG  G+C+GAK  VQ   G      AA + HPSFV++++I+ ++   P+ I  AE D + P  L    EE L   +A  ++D    +F  VA G+  R ++
Sbjct:   50 DVYGNKFNNVLLTADKFASAGYMVFVPDILFGDAISSDKPIDRDAWFQRHSPEVTKKIVDGFMKLLKLEYDPKFIGVVGYCFGAKFAVQHISGDGGLANAAAIAHPSFVSIEEIEAIDSKKPILISAAEEDHIFPANLRHLTEEKLKDNHATYQLD----LFSGVAHGFAARGDI 220          
The following BLAST results are available for this feature:
BLAST of FC924963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
E134_MAIZE1.034e-2844.22Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=... [more]
CMBL_XENTR8.500e-1532.35Carboxymethylenebutenolidase homolog OS=Xenopus tr... [more]
CMBL_XENLA9.398e-1430.95Carboxymethylenebutenolidase homolog OS=Xenopus la... [more]
AIM2_YEAST7.956e-1332.00Protein AIM2 OS=Saccharomyces cerevisiae GN=AIM2 P... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YO18FM1 TF Citrus clementina cDNA clone KN0AAP6YO18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924963 ID=FC924963; Name=FC924963; organism=Citrus clementina; type=EST; length=512bp
CGACGTTTATGCTTTTGAAGCTCCAAACTTGAGGAAGCTTGCAGACAAAG
TTGCAGCAGCTGGATTCTACGTGGCAGTTCCTGACTTCTTTCATGGGGAT
CCATATGTAGCTGATGGTGGGAAACCTCTACAAGAATGGATAAAAGATCA
TGGGGTGGATAAGGGATTTGAAGAGGCAAAGCCAGTTATTCAAGCTCTTA
AGAGTAAAGGTATAACTGCAATTGGGGCTGCGGGCTTCTGCTGGGGCGCT
AAAGTGGTTGTTCAACTAGGAAAACGTGAGTTCATCCAAGCTGCTGTGCT
GTTACATCCCTCTTTTGTCACTGTAGATGATATCAAGGGGGTTGAGGTTC
CCCTTTCAATTCTAGGAGCCGAAATTGATCGCTTGTCTCCACCAGCTCTC
GTGAAGGAATTTGAAGAGGCCTTAAATGCCATATCTGAGGTTGATAGCTT
TGTGAAAATATTTCCTAAAGTGGCTCCTGGATGGACAGTGAGATATAATG
TAGAAGATGAAT
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