FC924965
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.080e-25 Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = 2 Query: 2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223 D +LETLF EQGKV++AKVVYDR+SGRSRGFGFVTYSSAE V++AI+SL+GVDL GRAIRVS AEARP RRQF Sbjct: 200 DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.080e-25 Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = 2 Query: 2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223 D +LETLF EQGKV++AKVVYDR+SGRSRGFGFVTYSSAE V++AI+SL+GVDL GRAIRVS AEARP RRQF Sbjct: 206 DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.491e-23 Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 2 Query: 2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223 DDL+L+ LF EQG V++AKVVYDR+SGRSRGFGFVTYSSA+ V+ AIDSLNG+DL GR+IRVS AE RP RRQF Sbjct: 220 DDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP-RRQF 292
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 2.543e-23 Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 2 Query: 2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223 DDL+L+ LF EQG V++AKVVYDR+SGRSRGFGFVTYSS++ V+ AIDSLNGVDL GR+IRVS AE RP RRQF Sbjct: 219 DDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP-RRQF 291
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 7.398e-23 Identity = 51/74 (68.92%), Postives = 64/74 (86.49%), Query Frame = 2 Query: 2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223 DD++LE+LF EQGKV+EA+V+YDR+SGRS+GFGFVTY S++ V +AI SL+G DL GR IRVS AEARP RRQ+ Sbjct: 216 DDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 1.648e-22 Identity = 52/74 (70.27%), Postives = 62/74 (83.78%), Query Frame = 2 Query: 2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223 DD++LE LF EQGKV+EA+V+YDR+SGRS+GFGFVT SS++ V AI+SLNG DL GR IRVS AEARP R QF Sbjct: 269 DDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 342
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.217e-18 Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 2 Query: 2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223 D+ LE LF E GKV+EA+VVYDRE+GRSRGFGFVT S + ++ AI +L+G +L GRAIRV+VAE RP RR + Sbjct: 256 DNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRGY 329
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16 Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 2 Query: 2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223 DD LE +F E GKV+ A+VV+DRESGRSRGFGFVT SS + AI +L+G L GR IRV+ AE RP+R + Sbjct: 203 DDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRNTY 276
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 3.932e-16 Identity = 44/74 (59.46%), Postives = 53/74 (71.62%), Query Frame = 2 Query: 2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223 DD LE LF E GKV+ A+VVYDRE+GRSRGFGFVT +S + AI +L+G L GR IRV+VAE R +R F Sbjct: 242 DDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRNTF 315
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 8.760e-16 Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 2 Query: 2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQR 214 D LE LF E GKV+ A+VV DRE+GRSRGFGFVT SS V+ AI +L+G L GRA+RV+VAE RP+R Sbjct: 161 DTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRR 231 The following BLAST results are available for this feature:
BLAST of FC924965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >FC924965 ID=FC924965; Name=FC924965; organism=Citrus clementina; type=EST; length=485bpback to top |