FC924965

Overview
NameFC924965
Unique NameFC924965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14584 contig Ccv1_Contig14584:1..485. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.080e-25
Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = 2
Query:    2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223
            D  +LETLF EQGKV++AKVVYDR+SGRSRGFGFVTYSSAE V++AI+SL+GVDL GRAIRVS AEARP RRQF
Sbjct:  200 DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273          
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.080e-25
Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = 2
Query:    2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223
            D  +LETLF EQGKV++AKVVYDR+SGRSRGFGFVTYSSAE V++AI+SL+GVDL GRAIRVS AEARP RRQF
Sbjct:  206 DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279          
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.491e-23
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 2
Query:    2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223
            DDL+L+ LF EQG V++AKVVYDR+SGRSRGFGFVTYSSA+ V+ AIDSLNG+DL GR+IRVS AE RP RRQF
Sbjct:  220 DDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP-RRQF 292          
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.543e-23
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 2
Query:    2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223
            DDL+L+ LF EQG V++AKVVYDR+SGRSRGFGFVTYSS++ V+ AIDSLNGVDL GR+IRVS AE RP RRQF
Sbjct:  219 DDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP-RRQF 291          
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.398e-23
Identity = 51/74 (68.92%), Postives = 64/74 (86.49%), Query Frame = 2
Query:    2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223
            DD++LE+LF EQGKV+EA+V+YDR+SGRS+GFGFVTY S++ V +AI SL+G DL GR IRVS AEARP RRQ+
Sbjct:  216 DDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289          
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.648e-22
Identity = 52/74 (70.27%), Postives = 62/74 (83.78%), Query Frame = 2
Query:    2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223
            DD++LE LF EQGKV+EA+V+YDR+SGRS+GFGFVT SS++ V  AI+SLNG DL GR IRVS AEARP R QF
Sbjct:  269 DDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 342          
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.217e-18
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 2
Query:    2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223
            D+  LE LF E GKV+EA+VVYDRE+GRSRGFGFVT S  + ++ AI +L+G +L GRAIRV+VAE RP RR +
Sbjct:  256 DNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRGY 329          
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 2
Query:    2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223
            DD  LE +F E GKV+ A+VV+DRESGRSRGFGFVT SS   +  AI +L+G  L GR IRV+ AE RP+R  +
Sbjct:  203 DDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRNTY 276          
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.932e-16
Identity = 44/74 (59.46%), Postives = 53/74 (71.62%), Query Frame = 2
Query:    2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQRRQF 223
            DD  LE LF E GKV+ A+VVYDRE+GRSRGFGFVT +S   +  AI +L+G  L GR IRV+VAE R +R  F
Sbjct:  242 DDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRNTF 315          
BLAST of FC924965 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.760e-16
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 2
Query:    2 DDLSLETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAE*VDHAIDSLNGVDLAGRAIRVSVAEARPQR 214
            D   LE LF E GKV+ A+VV DRE+GRSRGFGFVT SS   V+ AI +L+G  L GRA+RV+VAE RP+R
Sbjct:  161 DTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRR 231          
The following BLAST results are available for this feature:
BLAST of FC924965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ROC1_NICSY2.080e-2579.7329 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL2.080e-2579.7330 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICPL1.491e-2375.6831 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICSY2.543e-2375.6829 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC1_ARATH7.398e-2368.92Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC2_ARATH1.648e-2270.2729 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC3_ARATH3.217e-1862.1631 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC3_NICSY3.011e-1658.1128 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY3.932e-1659.4631 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL8.760e-1661.9728 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN08FM1 TF Citrus clementina cDNA clone KN0AAP1YN08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924965 ID=FC924965; Name=FC924965; organism=Citrus clementina; type=EST; length=485bp
TGATGATTTATCTCTTGAGACTTTGTTTCGTGAGCAAGGGAAGGTTTTGG
AAGCCAAAGTGGTATATGACAGGGAGAGTGGTAGATCGCGGGGTTTCGGG
TTTGTGACTTACAGTTCTGCTGAATAGGTTGACCATGCAATTGATTCCTT
GAATGGTGTAGATTTGGCCGGTAGAGCAATTCGAGTCTCGGTGGCTGAAG
CAAGGCCACAAAGGCGTCAATTTTGAGCTGTGGCAGAAACTAGTTTTCAA
TTGTTTTGATTTTATCGTTAGTTATTTGTGTTGTTATAAGGCTGCTTATC
AGTGCTAACAAATCATCGGCTTCAAAGACAAGATTCATGATTATTTGTTT
TTGCATATGCGAGATGCATGTTGCCTTGTTATAATTTCTAACTATCATCA
TGAGCCGCAGCAGATTATGGAGCTGCTTTATTCATGAGCGGGATCCTTGC
ATCTGGCATTTTGATAATTCCATCACTGTGACACT
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