FC924966

Overview
NameFC924966
Unique NameFC924966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1805 contig Ccv1_Contig1805:2..448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of FC924966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
UBIQ_WHEAT1.784e-1169.23Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_TRYCR1.784e-1169.23Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_SOYBN1.784e-1169.23Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU1.784e-1169.23Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC1.784e-1169.23Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR1.784e-1169.23Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA1.784e-1169.23Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ1.784e-1169.23Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY1.784e-1169.23Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE1.784e-1169.23Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN09FM1 TF Citrus clementina cDNA clone KN0AAP1YN09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924966 ID=FC924966; Name=FC924966; organism=Citrus clementina; type=EST; length=447bp
ATTTTTCTTCCATTAAAGGCCTCCTAATCTCTCTGTCAAGATCGAGGACA
AGGAAGAGATCCTACGAGACCAGCAGAGGTTCATCTTTGCTGGCAAACGA
CTCGAGGATGGTCGCACACTTGTAGACTACAACATCCACGGGTCAACCCT
TCATTCGGTCCGCCGTTTCAGGGGTGGCATGCAGATATTTGTGAAAACCC
TGACCGGCAAAACATAAATTTGAAGGTCGAAAGCTCTGACACAATCGACA
ATGTCAAGGCTAAGATCCAGGACAAGAAGGGAACTCCACCGGACCAGCAG
AGGCAGATCTTTTGGTTTGTGTTTGGTTGGGGTAGTTTGTGGATGCCTCT
CCTGAGGTTTGACCTTTGACAATGTATCTGGACGTGTATAAGCGTAAAAG
ATGTATCGTGGACGTGTATAAGCGTAGAATATGTAGCTGGACGTGTA
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