FC924967

Overview
NameFC924967
Unique NameFC924967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3657 contig Ccv1_Contig3657:5..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC924967 vs. ExPASy Swiss-Prot
Match: ALF4_ARATH (Aberrant root formation protein 4 OS=Arabidopsis thaliana GN=ALF4 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.629e-37
Identity = 90/218 (41.28%), Postives = 125/218 (57.34%), Query Frame = 1 
Query:   10 PLLRLQEILT-SISKAFECGNISQSDNSVAELVKFLDSVSDSIESDSKNA------SEILAEIHEFLCTPSLDQAIIDSLSFELPKAVTKFAGLSSSCSEIANSIIDKLVATCSPRDMLSILCEALDSSIKTIKECDYFVPXXXXXXXXXXSTQRRHFEQAKVAVPVILKVLKTVSLEEDDENRECQHLFDQAIGIADAIRQVCLKLEGRMNEKLRAL 642
            P  R++E+L    S   E G     ++ V ELV  LDS+ +++  D+ N        E+L EI + L +P +DQ +ID+LSF LPK  +KFA +SS C ++   I+D+ V  C+PRDMLSILCEALD++           P            QRRH+EQ KVAVP++L VLK +SLE D    + + LFD+A+GIA +IR V  KL      K+R L
Sbjct:   42 PSRRVRELLALCFSSVEEAGGFQDFESFVTELVSCLDSLYENVALDANNELENDVIEEVLDEILKVLSSPQMDQDVIDALSFHLPKVTSKFADISSRCLQLVEEIVDRFVEACNPRDMLSILCEALDAARCYHSASTCSTPLLHGLSKVFILIQRRHYEQLKVAVPIVLNVLKDISLETD---VQVEDLFDKALGIASSIRDVSSKLNNEEEAKVRCL 256
The following BLAST results are available for this feature:
BLAST of FC924967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ALF4_ARATH2.629e-3741.28Aberrant root formation protein 4 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YO21FM1 TF Citrus clementina cDNA clone KN0AAP6YO21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924967 ID=FC924967; Name=FC924967; organism=Citrus clementina; type=EST; length=644bp
GATCAGCACCCCTTGCTTCGCCTTCAAGAAATCCTAACTTCAATCTCCAA
AGCATTTGAATGCGGAAATATCAGTCAGTCCGATAACTCTGTCGCAGAAC
TTGTCAAATTCCTTGATTCAGTTTCAGATTCCATTGAATCAGACTCGAAG
AATGCATCTGAAATTCTCGCAGAGATACATGAGTTTCTATGTACTCCTTC
ACTGGACCAGGCGATAATAGATTCACTGTCATTTGAGCTACCAAAGGCAG
TGACGAAGTTTGCTGGGTTGTCCAGTAGCTGTTCAGAGATTGCTAACAGT
ATCATTGATAAGCTTGTGGCAACATGTAGTCCACGAGACATGCTTTCAAT
TCTTTGTGAGGCATTGGATTCTTCGATTAAAACTATCAAGGAATGTGATT
ATTTTGTTCCTCTTTTAAGTGGTCTCTTGAAAGTATTACTTTCCACTCAG
AGGCGCCACTTTGAGCAAGCAAAAGTAGCAGTTCCTGTTATTCTTAAGGT
TTTAAAGACTGTGTCATTAGAGGAAGATGATGAAAATAGAGAATGTCAGC
ATTTGTTTGATCAAGCCATAGGCATTGCTGATGCTATCCGTCAAGTTTGC
TTGAAATTGGAGGGCAGAATGAATGAAAAACTTCGGGCTCTTCT
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