FC924974

Overview
NameFC924974
Unique NameFC924974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14585 contig Ccv1_Contig14585:1..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924974 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.213e-17
Identity = 43/60 (71.67%), Postives = 44/60 (73.33%), Query Frame = 2
Query:   89 EIRYRGVRKRPWGRYAA*IPDPGKKTRVWLGTFDTXXXXXXXXXXXXXXFRGAKAETNFP 268
            EIRYRGVRKRPWGRYAA I DPGKKTRVWLGTFDT              FRGAKA+TNFP
Sbjct:   22 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of FC924974 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.703e-17
Identity = 41/64 (64.06%), Postives = 45/64 (70.31%), Query Frame = 2
Query:   89 EIRYRGVRKRPWGRYAA*IPDPGKKTRVWLGTFDTXXXXXXXXXXXXXXFRGAKAETNFPAPDE 280
            E+ +RGVRKRPWGRYAA I DPGKKTRVWLGTFDT              FRG+KA+TNFP P E
Sbjct:   30 EVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGE 93          
BLAST of FC924974 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.703e-17
Identity = 41/64 (64.06%), Postives = 45/64 (70.31%), Query Frame = 2
Query:   89 EIRYRGVRKRPWGRYAA*IPDPGKKTRVWLGTFDTXXXXXXXXXXXXXXFRGAKAETNFPAPDE 280
            E+ YRGVRKRPWGRYAA I DPGKK+RVWLGTFDT              FRG KA+TNFP+P E
Sbjct:   24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPSPTE 87          
BLAST of FC924974 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.531e-17
Identity = 41/64 (64.06%), Postives = 44/64 (68.75%), Query Frame = 2
Query:   89 EIRYRGVRKRPWGRYAA*IPDPGKKTRVWLGTFDTXXXXXXXXXXXXXXFRGAKAETNFPAPDE 280
            E+ YRGVRKRPWGRYAA I DPGKK+RVWLGTFDT              FRG KA+TNFP P E
Sbjct:   24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPLPSE 87          
BLAST of FC924974 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.136e-15
Identity = 39/62 (62.90%), Postives = 42/62 (67.74%), Query Frame = 2
Query:   89 EIRYRGVRKRPWGRYAA*IPDPGKKTRVWLGTFDTXXXXXXXXXXXXXXFRGAKAETNFPAP 274
            E+ YRGVRKRPWGRYAA I DP KKTRVWLGTFDT               RG KA+TNFP+P
Sbjct:    9 EVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSP 70          
BLAST of FC924974 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.937e-15
Identity = 39/59 (66.10%), Postives = 42/59 (71.19%), Query Frame = 2
Query:   92 IRYRGVRKRPWGRYAA*IPDPGKKTRVWLGTFDTXXXXXXXXXXXXXXFRGAKAETNFP 268
            +RYRGVRKRPWGRYAA I DP KK+RVWLGTFDT              FRGAKA+TNFP
Sbjct:   18 VRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of FC924974 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.530e-15
Identity = 40/59 (67.80%), Postives = 41/59 (69.49%), Query Frame = 2
Query:   89 EIRYRGVRKRPWGRYAA*IPDPGKKTRVWLGTFDTXXXXXXXXXXXXXXFRGAKAETNF 265
            EIRYRGVRKRPWGRYAA I DP KKTRVWLGTFDT              FRG KA+TNF
Sbjct:   28 EIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
BLAST of FC924974 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.615e-15
Identity = 38/62 (61.29%), Postives = 42/62 (67.74%), Query Frame = 2
Query:   89 EIRYRGVRKRPWGRYAA*IPDPGKKTRVWLGTFDTXXXXXXXXXXXXXXFRGAKAETNFPAP 274
            EIR+RGVRKRPWGR+AA I DP KKTRVWLGTFD+               RG KA+TNFP P
Sbjct:   25 EIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFPLP 86          
BLAST of FC924974 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.139e-14
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 2
Query:   89 EIRYRGVRKRPWGRYAA*IPDPGKKTRVWLGTFDTXXXXXXXXXXXXXXFRGAKAETNFP 268
            E+RYRGVR+RPWGRYAA I DP KK RVWLG+F+T              FRG+KA TNFP
Sbjct:   50 EVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFP 109          
BLAST of FC924974 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.813e-13
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 2
Query:   89 EIRYRGVRKRPWGRYAA*IPDPGKKTRVWLGTFDTXXXXXXXXXXXXXXFRGAKAETNFP 268
            EIR+RGVRKRPWGR+AA I DP KK RVWLGTFD+               RG KA+TNFP
Sbjct:   25 EIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFP 84          
The following BLAST results are available for this feature:
BLAST of FC924974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
ERF78_ARATH1.213e-1771.67Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF80_ARATH2.703e-1764.06Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF4_TOBAC2.703e-1764.06Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF4_NICSY3.531e-1764.06Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF81_ARATH1.136e-1562.90Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF76_ARATH1.937e-1566.10Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF79_ARATH2.530e-1567.80Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF3_TOBAC9.615e-1561.29Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF77_ARATH8.139e-1460.00Ethylene-responsive transcription factor 10 OS=Ara... [more]
ERF82_ARATH1.813e-1360.00Ethylene-responsive transcription factor 3 OS=Arab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YN17FM1 TF Citrus clementina cDNA clone KN0AAP1YN17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924974 ID=FC924974; Name=FC924974; organism=Citrus clementina; type=EST; length=537bp
CGAACAACTTGCTCCTCTGTTCAAAATGGCTCCGAGAGATAAGCTCAACA
AACCTTCCTCTAACCCGAATCCGAATTCGAAGGATATGGAGATCCGATAC
AGAGGAGTGAGGAAGCGGCCGTGGGGGCGTTACGCCGCCTAGATCCCGGA
CCCGGGGAAGAAAACCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGG
ACGCCGCACGTGCCTACGACGCAGCAGCGCGTGAGTTCCGCGGCGCCAAA
GCCGAGACAAACTTCCCAGCGCCAGACGAAATCCTTGGCACCCTCGCCCG
CAGCCCCAGCCAGAGCAGCACCGTGGAGTCATCCTCTCCTCCTCCGCCGA
CGCTGCTGCCAGAGGCACGAGCTGCTGCCACAGCTAAACCTAGCTCTGAA
CAGCTACCGTAATGCCGGCGCGTGCCTCCCAGTCGCCACGGCGCGTCCGG
TCCTTTTCTTCGACATTTTCTCCTCCGAGTGAGTACTGTTGCGACTCTAA
GTGATGCACGCTGTGTTGGTTTTGATCCCGGCGGGAC
back to top