FC924976

Overview
NameFC924976
Unique NameFC924976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13991 contig Ccv1_Contig13991:627..1377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_CORGL (GTP pyrophosphokinase OS=Corynebacterium glutamicum GN=relA PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.014e-28
Identity = 61/117 (52.14%), Postives = 78/117 (66.67%), Query Frame = 2
Query:   14 DEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHS--SFVLQMVEWARWVLTWQCEA 358
            D+I D+ G+R++V+N  +CY A+ VVH L+  +PG+ KDYI+ P+F  YQSLHT V G G  PLEVQ RT +MH  AEFG AAHWRYKE    HS     +  + W R +L WQ EA
Sbjct:  285 DDIFDLVGIRILVDNVNNCYAAIGVVHSLFNALPGRFKDYISAPRFGVYQSLHTTVMGPGGKPLEVQARTHDMHYNAEFGIAAHWRYKETKGSHSGEQAEVDQMAWMRQLLDWQKEA 401          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_MYCLE (Probable GTP pyrophosphokinase OS=Mycobacterium leprae GN=relA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.571e-28
Identity = 58/121 (47.93%), Postives = 79/121 (65.29%), Query Frame = 2
Query:   14 DEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ------HSSFVLQMVEWARWVLTWQCEA 358
            D+IHD+ G+R++ +   DCY A+ VVH LW  + G+ KDYI +P++  YQSLHT V G    PLEVQIRT++MH  AE+G AAHWRYKE   +      H++  +  + W R +L WQ EA
Sbjct:  310 DDIHDLVGIRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHWRYKEAKGRNGVLHPHAAAEIDDMAWMRQLLDWQREA 430          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_MYCTU (Probable GTP pyrophosphokinase OS=Mycobacterium tuberculosis GN=relA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.582e-28
Identity = 58/121 (47.93%), Postives = 79/121 (65.29%), Query Frame = 2
Query:   14 DEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ------HSSFVLQMVEWARWVLTWQCEA 358
            D+IHD+ G+R++ +   DCY A+ VVH LW  + G+ KDYI +P++  YQSLHT V G    PLEVQIRT++MH  AE+G AAHWRYKE   +      H++  +  + W R +L WQ EA
Sbjct:  313 DDIHDLVGVRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHWRYKEAKGRNGVLHPHAAAEIDDMAWMRQLLDWQREA 433          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_MYCBO (Probable GTP pyrophosphokinase OS=Mycobacterium bovis GN=relA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.582e-28
Identity = 58/121 (47.93%), Postives = 79/121 (65.29%), Query Frame = 2
Query:   14 DEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ------HSSFVLQMVEWARWVLTWQCEA 358
            D+IHD+ G+R++ +   DCY A+ VVH LW  + G+ KDYI +P++  YQSLHT V G    PLEVQIRT++MH  AE+G AAHWRYKE   +      H++  +  + W R +L WQ EA
Sbjct:  313 DDIHDLVGVRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHWRYKEAKGRNGVLHPHAAAEIDDMAWMRQLLDWQREA 433          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_HAEIN (GTP pyrophosphokinase OS=Haemophilus influenzae GN=relA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.563e-27
Identity = 54/115 (46.96%), Postives = 76/115 (66.09%), Query Frame = 2
Query:    5 LTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQ 349
            L    ++D+  +R+IV+  +DCY AL +VH  +  +P +  DY+  PK NGYQS+HTVV G+G  P+EVQIRT++MH  AE G AAHW+YKEG+    S   + + W R +L WQ
Sbjct:  270 LEFSGLYDVRAVRIIVQKLQDCYTALGIVHTQFKHLPKEFDDYVANPKPNGYQSIHTVVLGKGGKPIEVQIRTQQMHDDAELGMAAHWKYKEGNTGSMSAYEEKIAWLRKLLAWQ 384          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: SPOT_SYNY3 (Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803) GN=spoT PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.239e-26
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = 2
Query:   14 DEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVE---WARWVLTWQCE 355
            +EI+DI  LR+IVE++ +CY+AL VVH ++  +PG+ KDYI  PK N YQSLHT V G    PLE+QIRT+EMH  AE+G AAHW+YKE     ++ +    E   W R +L WQ +
Sbjct:  287 EEIYDIAALRIIVESKGECYRALSVVHDVFKPIPGRFKDYIGLPKPNRYQSLHTTVLGLTSRPLEIQIRTEEMHHVAEYGIAAHWKYKESGGSENATLTSTDEKFTWLRQLLDWQSD 403          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_STRCO (GTP pyrophosphokinase OS=Streptomyces coelicolor GN=relA PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 60/128 (46.88%), Postives = 77/128 (60.16%), Query Frame = 2
Query:   17 EIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFV---------------LQMVEWARWVLTWQCE 355
            EI+D+ G+R++V+   DCY AL  VH  W  VPG+ KDYI  PKFN YQSLHT V G G  P+E+QIRT +MH +AE+G AAHW+YK+     +S V               L  + W R +L WQ E
Sbjct:  358 EIYDLVGIRVLVDTVRDCYAALGTVHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPGGKPVELQIRTFDMHRRAEYGIAAHWKYKQEAVAGASKVRTDAPKSSGKSKDDHLNDMAWLRQLLDWQKE 485          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_STRAT (GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.049e-25
Identity = 59/127 (46.46%), Postives = 76/127 (59.84%), Query Frame = 2
Query:   17 EIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFV--------------LQMVEWARWVLTWQCE 355
            EI+D+ G+R++V+   DCY AL  VH  W  VPG+ KDYI  PKFN YQSLHT V G    P+E+QIRT +MH +AE+G AAHW+YK+     +S V              L  + W R +L WQ E
Sbjct:  355 EIYDLVGIRVLVDTVRDCYAALGTVHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPNGKPVELQIRTFDMHRRAEYGIAAHWKYKQEAVARASKVRTDVPKPAKGKDDHLNDMAWLRQLLDWQKE 481          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_PHOAS (GTP pyrophosphokinase OS=Photobacterium angustum (strain S14 / CCUG 15956) GN=relA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.206e-25
Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = 2
Query:    5 LTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ--HSSFVLQMVEWARWVLTWQCE 355
            L  DE+ D+  +R++ E  +DCY AL VVH  +  +P +  DY+  PK NGYQS+HTVV G     +E+QIRTK+MH ++E G AAHW+YKEG       S   + + W R +L WQ E
Sbjct:  267 LEFDELFDVRAVRIVAEELQDCYAALGVVHTKYRHLPKEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKQMHEESELGVAAHWKYKEGTASGGAQSAYDEKINWLRKLLAWQEE 385          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_SHIFL (GTP pyrophosphokinase OS=Shigella flexneri GN=relA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.800e-25
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 2
Query:    5 LTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHS--SFVLQMVEWARWVLTWQCE 355
            L  DE+ D+  +R++ E  +DCY AL +VH  +  +P +  DY+  PK NGYQS+HTVV G G   +E+QIRTK+MH  AE G AAHW+YKEG       S     + W R ++ WQ E
Sbjct:  268 LAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEE 386          
The following BLAST results are available for this feature:
BLAST of FC924976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RELA_CORGL1.014e-2852.14GTP pyrophosphokinase OS=Corynebacterium glutamicu... [more]
RELA_MYCLE6.571e-2847.93Probable GTP pyrophosphokinase OS=Mycobacterium le... [more]
RELA_MYCTU8.582e-2847.93Probable GTP pyrophosphokinase OS=Mycobacterium tu... [more]
RELA_MYCBO8.582e-2847.93Probable GTP pyrophosphokinase OS=Mycobacterium bo... [more]
RELA_HAEIN5.563e-2746.96GTP pyrophosphokinase OS=Haemophilus influenzae GN... [more]
SPOT_SYNY31.239e-2650.43Probable guanosine-3',5'-bis(diphosphate) 3'-pyrop... [more]
RELA_STRCO4.709e-2646.88GTP pyrophosphokinase OS=Streptomyces coelicolor G... [more]
RELA_STRAT1.049e-2546.46GTP pyrophosphokinase OS=Streptomyces antibioticus... [more]
RELA_PHOAS5.206e-2545.38GTP pyrophosphokinase OS=Photobacterium angustum (... [more]
RELA_SHIFL6.800e-2545.38GTP pyrophosphokinase OS=Shigella flexneri GN=relA... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN19FM1 TF Citrus clementina cDNA clone KN0AAP1YN19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924976 ID=FC924976; Name=FC924976; organism=Citrus clementina; type=EST; length=751bp
GAAGCTGACCATGGATGAAATCCATGATATCCATGGTCTTCGTTTAATTG
TTGAAAATGAGGAAGACTGCTACCAAGCACTGAGAGTTGTTCATCAGTTG
TGGGCTGAAGTACCTGGAAAGATGAAGGATTACATAACCCGGCCCAAGTT
CAACGGGTATCAGTCGCTTCACACAGTGGTGACAGGTGAAGGTCTGGTTC
CACTTGAAGTTCAAATCCGAACAAAAGAGATGCATTTGCAGGCTGAGTTT
GGGTTTGCTGCTCATTGGAGATACAAAGAAGGTGATTGCCAGCATTCTTC
TTTTGTGCTTCAGATGGTTGAGTGGGCTAGATGGGTTCTTACCTGGCAGT
GTGAGGCAATGAGCAAAGATCGTTCTTGTGTTGGCAATGGTGACTCCATC
AAGCCACCATGCACGTTTCCCTCACATGCTGATGATTGCCCATTTTCTTA
TAAGCCTCAGTGCAGCCATGATGGACCTGTCTTTGTCATCATGATTGAGA
ATGATAAGATGTCAGTGCAGGAGTTTCCTACAAACGCCACAGTAATGGAT
TTGCTGGAAAGAGCCGGACGGGGAAGCTCAAGATGGTCGCCGTATGGGTT
CCCTCTGAAGGAAGAATTGAGGCCAAGGCTGAACCACAAGGCAGTAGGTG
ATCCCAGATGTAAGTTGAAGATGGGTGATGTGGTAGAGCTCACTCCAGCT
ATACCTGACAAATCTTTAACGGAATACAGAGAGGAGATCCAGCGGATGTA
T
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