FC924979

Overview
NameFC924979
Unique NameFC924979
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15217 contig Ccv1_Contig15217:22..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924979 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.125e-84
Identity = 148/189 (78.31%), Postives = 163/189 (86.24%), Query Frame = 1
Query:   52 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERH 618
            MKHNNVIPNGHFKKHWQNYVKTWFNQP                IFPRPT+GPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT+ELVK+T +MKSFKA+DK+R+ER N+RH
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRH 189          
BLAST of FC924979 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 8.065e-83
Identity = 148/189 (78.31%), Postives = 159/189 (84.13%), Query Frame = 1
Query:   52 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERH 618
            MKHNNVIPNGHFKKHWQNYVKTWFNQP                IFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG+S+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK  +ELVK+T +MKS  AYDK+R+ER N+RH
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRH 189          
BLAST of FC924979 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.065e-82
Identity = 147/189 (77.78%), Postives = 159/189 (84.13%), Query Frame = 1
Query:   52 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERH 618
            MKHNNVIPNGHFKKHWQNYVKTWFNQP                IFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELK+AGIPKKLAPTIG++VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK   ELVK+T +MKS KA+DK+R+ER N+RH
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRH 189          
BLAST of FC924979 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.228e-82
Identity = 146/189 (77.25%), Postives = 160/189 (84.66%), Query Frame = 1
Query:   52 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERH 618
            MKHNNVIP+ HF+KHWQNYVKTWFNQP                IFPRPT+GPLRPVVHGQTLKYNMK+RAG+GFTLEELK AGIPKKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQVQG YMPIA  K  +ELVK+T D+K+FKAYDK+R+ER N RH
Sbjct:    1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARH 189          
BLAST of FC924979 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.190e-75
Identity = 137/189 (72.49%), Postives = 152/189 (80.42%), Query Frame = 1
Query:   52 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERH 618
            MKHNNVIPNGHFKK W+NYVKT FNQP                IFPRPTAGP+RPVVH QTL YNMK+RAG+GFTLEELKAAGIPKKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA ATQVQ  +MPI  E PT+ELVK+T DMK F AYDK+R+E +N+RH
Sbjct:    1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRH 189          
BLAST of FC924979 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.440e-63
Identity = 120/181 (66.30%), Postives = 136/181 (75.14%), Query Frame = 1
Query:   76 NGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERH 618
            NGHFKKHWQNYVKTWFNQP                I PRPTAG LRP+VHGQTLKYNMK+R+GRGF+LEELKAAGIPKKLAPTIG++VDHRR+NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P    TATQV G YMPI  EK  + L KV + MKSF AY KLR+ER NERH
Sbjct:    5 NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNERH 185          
BLAST of FC924979 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.693e-56
Identity = 106/188 (56.38%), Postives = 133/188 (70.74%), Query Frame = 1
Query:   52 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNER 615
            ++ N+++PNGHF K WQ +VKTWFNQP                 FPRP AG L+P+V  QT+KYN K R GRGFTLEELK AGIP K APT+G++VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A+Q +G  +P+   KP +ELVK+T DMK    Y KLRIERVN R
Sbjct:    2 VRGNDMLPNGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKLRIERVNAR 189          
BLAST of FC924979 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 1.813e-50
Identity = 102/187 (54.55%), Postives = 125/187 (66.84%), Query Frame = 1
Query:   61 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHF 621
            N +I N HF K WQ  V+TWFNQP                I PRP +GPLRPVV   T++Y+ K+RAGRGFTLEELKAAGI KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  ATQ+ GP MPI       +   +++D K+FKA+  LR+ R N R F
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLF 192          
BLAST of FC924979 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.000e-50
Identity = 99/188 (52.66%), Postives = 127/188 (67.55%), Query Frame = 1
Query:   55 KHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKP-TVELVKVTQDMKSFKAYDKLRIERVNER 615
            K NN+IPN H+ K WQ +VKTWFNQP                +FPRP +G LRPVV   T++Y+ KLRAGRGFTLEELK AGI    A TIG++VD RRKN+SLE  Q N+QRLK Y++KL++FP   +K +AG+S+ EE   ATQ++GP +PI  E+P  VE  +VT+D K FKA+  LR  R + R
Sbjct:    3 KGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDAR 190          
BLAST of FC924979 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 4.181e-47
Identity = 96/187 (51.34%), Postives = 120/187 (64.17%), Query Frame = 1
Query:   61 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHF 621
            N +I N HF K WQ  V+TWFNQP                I PRP AGPLRP+V   T++YN K+RAGRGFTLEELKAAGI K++A TIG++VD RR+NRS E L  NVQRLK Y++KL++FPR+    K GDS  EE+  ATQ+ GP MPI       +   +T++ K F A+  LR+ R N R F
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLF 192          
The following BLAST results are available for this feature:
BLAST of FC924979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL131_ARATH1.125e-8478.3160S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL132_BRANA8.065e-8378.3160S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_BRANA3.065e-8277.7860S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL133_ARATH5.228e-8277.2560S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_ARATH6.190e-7572.49Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC2.440e-6366.3060S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_CHLSW1.693e-5656.3860S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_DANRE1.813e-5054.5560S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_DROME9.000e-5052.6660S ribosomal protein L13 OS=Drosophila melanogast... [more]
RL13_ICTPU4.181e-4751.3460S ribosomal protein L13 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN22FM1 TF Citrus clementina cDNA clone KN0AAP1YN22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924979 ID=FC924979; Name=FC924979; organism=Citrus clementina; type=EST; length=690bp
GAGACTGATAGAAACGGACATAGTCGTCTGCATTTCGCTCTGTAAACAGA
AATGAAGCATAACAACGTAATTCCAAATGGGCACTTTAAGAAGCATTGGC
AGAACTATGTCAAGACTTGGTTCAACCAACCTGCTCGCAAAAATCGACGA
CGAGTCGCTCGTCAAAAGAAGGCCGTTAAAATCTTCCCTCGCCCTACTGC
TGGGCCGCTTCGTCCCGTCGTTCATGGCCAGACTTTGAAATACAACATGA
AATTAAGGGCTGGCAGAGGCTTTACTCTTGAGGAACTCAAGGCTGCTGGA
ATTCCCAAGAAACTGGCTCCGACAATTGGTGTTTCAGTCGATCATCGACG
CAAGAACCGTTCTCTTGAGGGTCTTCAATCTAATGTTCAGAGGCTCAAGA
CTTACAAGGCTAAGTTGGTTGTTTTCCCAAGACGTGCTCGCAAGTTCAAG
GCAGGTGATTCTGCCCCTGAGGAATTGGCAACAGCAACTCAAGTACAAGG
ACCTTACATGCCCATTGCTCCTGAGAAGCCTACTGTCGAGCTTGTTAAGG
TTACTCAAGATATGAAGTCCTTCAAGGCTTATGACAAACTCCGTATCGAG
CGTGTGAACGAGCGCCATTTTGGTGCCAGGATGAAGAAGGCAGCAGAAGG
CTGAAAAGGAAGAGAAAAAATAAAAAAACTTGTTTAAGCA
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