FC924987

Overview
NameFC924987
Unique NameFC924987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length813
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3753 contig Ccv1_Contig3753:1..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 6.383e-104
Identity = 179/228 (78.51%), Postives = 192/228 (84.21%), Query Frame = 2
Query:  128 AGNFHQDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFSQEL 811
            + NF +D +ITWGDGR  I NNG LLTLSLDKASGSGFQSKNEYLFGKIDMQ+KLV GNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFT GKGD+EQQF LWFDPT+DFHTYSILWNPQRI+FSVDGTPIREFKN ES G  FPKNQPMR+YSSLWNA++WATRGGLVKTDW+ APFTASYR FN +ACV  NG+                W SQEL
Sbjct:   23 SANFQRDVEITWGDGRGQITNNGDLLTLSLDKASGSGFQSKNEYLFGKIDMQIKLVAGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTQGKGDREQQFKLWFDPTSDFHTYSILWNPQRIIFSVDGTPIREFKNMESQGTLFPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACVVINGQ--SSCPNVSGQGSTGSWLSQEL 248          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 4.138e-103
Identity = 173/228 (75.88%), Postives = 192/228 (84.21%), Query Frame = 2
Query:  128 AGNFHQDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFSQEL 811
            + NF +D +ITWGDGR  I NNG+LLTLSLDK+SGSGFQSKNEYLFGK+ MQ+KLVPGNSAGTVT  YLKSPG+TWDEIDFEFLGN SG+PYTLHTNV+T GKGDKEQQF LWFDPTA+FHTY+ILWNPQRI+F+VDGTPIREFKN ES+G  FPKN+PMR+YSSLWNADDWATRGGLVKTDW+ APFTASYR F  +ACVWSNGK                W SQEL
Sbjct:   20 SANFQRDVEITWGDGRGQIKNNGELLTLSLDKSSGSGFQSKNEYLFGKVSMQMKLVPGNSAGTVTTLYLKSPGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKGDKEQQFKLWFDPTANFHTYTILWNPQRIIFTVDGTPIREFKNMESLGTLFPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACVWSNGK-SSCPNASKQGTTTGSWLSQEL 246          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 367.081 bits (941), Expect = 6.606e-101
Identity = 170/228 (74.56%), Postives = 188/228 (82.46%), Query Frame = 2
Query:  128 AGNFHQDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFSQEL 811
            AG F  +FDITWGDGR  +LNNG+LLTLSLD+ASGSGFQ+K EYLFGKIDMQLKLVPGNSAGTVTAYYLKS G TWDEIDFEFLGNL+GDPYT+HTNV+T GKGD+EQQFHLWFDPTADFHTYS+LWNP  IVF VD  P+REFKN + +G+ +PK QPMR+YSSLWNAD WATRGGLVKTDW+ APFTASYRNF ADACV S G+                WFSQ L
Sbjct:   27 AGTFDTEFDITWGDGRGKVLNNGELLTLSLDRASGSGFQTKKEYLFGKIDMQLKLVPGNSAGTVTAYYLKSKGDTWDEIDFEFLGNLTGDPYTMHTNVYTQGKGDREQQFHLWFDPTADFHTYSVLWNPHHIVFMVDDIPVREFKNLQHMGIQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADACVSSGGR-------SSCPAGSPRWFSQRL 247          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 355.14 bits (910), Expect = 2.598e-97
Identity = 163/204 (79.90%), Postives = 182/204 (89.22%), Query Frame = 2
Query:  128 AGNFHQDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSN 739
            A +F+ D ++ WG+GR  ILNNGQLLTLSLDK+SGSGFQSK EYLFGKIDMQ+KLVPGNSAGTVT +YLKS GSTWDEIDFEFLGN+SGDPYTLHTNV+T GKGDKEQQFHLWFDPTA+FHTYSILWNPQRI+ +VD TPIREFKN ES+GV FPKN+PMR+Y+SLWNADDWATRGGLVKTDW+ APF ASYRN   D+   SN
Sbjct:   21 AADFNTDVNVAWGNGRGKILNNGQLLTLSLDKSSGSGFQSKTEYLFGKIDMQIKLVPGNSAGTVTTFYLKSEGSTWDEIDFEFLGNMSGDPYTLHTNVYTQGKGDKEQQFHLWFDPTANFHTYSILWNPQRIILTVDDTPIREFKNYESLGVLFPKNKPMRMYASLWNADDWATRGGLVKTDWSKAPFMASYRNIKIDSKPNSN 224          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 9.871e-97
Identity = 156/207 (75.36%), Postives = 183/207 (88.41%), Query Frame = 2
Query:  128 AGNFHQDFDITWGDGRANILNN-GQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGK 745
            AG+FH+D  I WGDGR  IL+N G LL+LSLDK SGSGFQS  E+L+GK+++Q+KLVPGNSAGTVT +YLKSPG+TWDEIDFEFLGN+SG PYTLHTNV+T G GDKEQQFHLWFDPT DFHTY I+WNPQR++F++DG PIREFKNSE++GV FPK+QPMR+Y+SLW A+ WATRGGL KTDW+ APFTA YRN+N DACVWSNGK
Sbjct:   26 AGSFHKDVQIHWGDGRGKILDNVGNLLSLSLDKFSGSGFQSHQEFLYGKVEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVDFHTYCIIWNPQRVIFTIDGIPIREFKNSEALGVPFPKHQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVDACVWSNGK 232          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 7.821e-94
Identity = 157/229 (68.56%), Postives = 185/229 (80.79%), Query Frame = 2
Query:  128 AGNFHQDFDITWGDGRANILN-NGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFSQEL 811
            AG+FH+D  I WGDGR  + + +G+LL+LSLDK+SGSGFQS  E+L+GK ++Q+KLVPGNSAGTVT +YLKSPG+TWDEIDFEFLGNLSG PYTLHTNV+T G GDKEQQFHLWFDPT +FHTY I WNPQRI+F+VDG PIREFKNSESIGV FP  QPMR+Y+SLW A+ WATRGGL KTDW+ APFTA YRN+N + CVW+NGK                WF+Q+L
Sbjct:   26 AGSFHKDVQIHWGDGRGKVRDRDGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNLSGHPYTLHTNVYTKGSGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNSESIGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVEGCVWANGK--------SSCPANSSWFTQQL 246          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.334e-93
Identity = 154/202 (76.24%), Postives = 177/202 (87.62%), Query Frame = 2
Query:  134 NFHQDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNAD-ACVWS 736
            +F+QD DITWGDGR NILNNG LL L LD++SGSGFQSK EYL+GK+DMQ+KLVPGNSAGTVT +YLKS G TWDEIDFEFLGN+SGDPY +HTNV+T GKGD+EQQF+LWFDPTA FH YSILWNP  IVF +DG PIREFKN E +GVA+PKNQPMR+Y SLWNADDWATRGGLVKT+W+  PF AS+ N+N++ ACVWS
Sbjct:   27 DFNQDIDITWGDGRGNILNNGTLLNLGLDQSSGSGFQSKAEYLYGKVDMQIKLVPGNSAGTVTTFYLKSQGLTWDEIDFEFLGNVSGDPYIVHTNVYTQGKGDREQQFYLWFDPTAAFHNYSILWNPSHIVFYIDGKPIREFKNLEVLGVAYPKNQPMRMYGSLWNADDWATRGGLVKTNWSQGPFVASFMNYNSENACVWS 228          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 6.621e-93
Identity = 156/229 (68.12%), Postives = 184/229 (80.35%), Query Frame = 2
Query:  128 AGNFHQDFDITWGDGRANILN-NGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFSQEL 811
            AG+FH+D  I WGDGR  I + +G+LL+LSLDK+SGSGFQS  E+L+GK ++Q+KLVPGNSAGTVT +YLKSPG+TWDEIDFEFLGN+SG PYTLHTNV+T G GDKEQQFHLWFDPT +FHTY I WNPQRI+F+VDG PIREFKN E+IGV FP  QPMR+Y+SLW A+ WATRGGL KTDW+ APFTA YRN+N D CVW+NGK                WF+Q+L
Sbjct:   26 AGSFHKDVQIHWGDGRGKIHDRDGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNPEAIGVPFPTRQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVDGCVWANGK--------SSCSANSPWFTQKL 246          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH19_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 19 OS=Arabidopsis thaliana GN=XTH19 PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 3.286e-92
Identity = 156/229 (68.12%), Postives = 183/229 (79.91%), Query Frame = 2
Query:  128 AGNFHQDFDITWGDGRANILNN-GQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFSQEL 811
            AG+FH+D  I WGDGR  I +N G+LL+LSLDK+SGSGFQS  E+L+GK ++Q+KLVPGNSAGTVT +YLKSPG+TWDEIDFEFLGN+SG PYTLHTNV+T G GDKEQQFHLWFDPTA+FHTY I WNPQRI+F+VDG PIREF N+ES GV FP  QPMR+Y+SLW A+ WATRGGL KTDW+ APFTA YRN+N + CVW NGK                WF+Q+L
Sbjct:   21 AGSFHKDVKIHWGDGRGKIHDNQGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGSGDKEQQFHLWFDPTANFHTYCITWNPQRIIFTVDGIPIREFMNAESRGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAYYRNYNVEGCVWVNGK--------SVCPANSQWFTQKL 241          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 4.292e-92
Identity = 156/197 (79.19%), Postives = 172/197 (87.31%), Query Frame = 2
Query:  128 AGNFHQDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNA 718
            AG+F+QDFD+TWG  RA I N GQLL+LSLDK SGSGF+SK EYLFG+IDMQLKLV GNSAGTVTAYYL S G T DEIDFEFLGNLSGDPY LHTN+FT GKG++EQQF+LWFDPT +FHTYSI+W PQ I+F VD TPIR FKN+E +GV FPKNQPMRIYSSLWNADDWATRGGLVKTDW+ APFTA YRNF A
Sbjct:   29 AGSFYQDFDLTWGGDRAKIFNGGQLLSLSLDKVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNTPIRVFKNAEPLGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKA 225          
The following BLAST results are available for this feature:
BLAST of FC924987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
XTH23_ARATH6.383e-10478.51Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH22_ARATH4.138e-10375.88Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH25_ARATH6.606e-10174.56Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH24_ARATH2.598e-9779.90Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH20_ARATH9.871e-9775.36Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH18_ARATH7.821e-9468.56Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH21_ARATH1.334e-9376.24Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH17_ARATH6.621e-9368.12Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH19_ARATH3.286e-9268.12Probable xyloglucan endotransglucosylase/hydrolase... [more]
BRU1_SOYBN4.292e-9279.19Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA08FM1 TF Citrus clementina cDNA clone KN0AAP8YA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924987 ID=FC924987; Name=FC924987; organism=Citrus clementina; type=EST; length=813bp
CTTTAAAAAATTTCAAACTTCTCTCCAACTCAATTTCTTCTATCTTGTTG
TTGCTCAGACGAAAGCTTCCATGGCTTCAGTATTGCATCTGTCGCTGCTG
CTTCTTGGCTCTTTGATGGTTACCTCTGCTGGTAACTTCCACCAAGATTT
TGATATCACTTGGGGAGACGGGCGTGCTAATATACTCAACAACGGCCAGC
TTCTTACTCTTTCCCTTGATAAAGCCTCTGGCTCCGGCTTCCAGTCCAAG
AATGAGTATCTATTCGGCAAGATTGATATGCAACTCAAACTAGTCCCTGG
CAACTCTGCCGGCACTGTCACTGCTTATTATTTAAAATCGCCAGGATCAA
CATGGGATGAGATAGACTTCGAGTTCTTGGGGAATTTAAGTGGTGACCCT
TACACTCTGCATACCAATGTATTCACAAATGGCAAAGGTGACAAAGAACA
ACAATTTCACCTCTGGTTTGACCCCACTGCTGACTTTCACACCTATTCTA
TCCTCTGGAATCCTCAGCGCATTGTCTTCTCTGTGGATGGTACTCCCATA
AGAGAGTTCAAGAACTCAGAGTCAATTGGAGTTGCATTCCCAAAGAATCA
GCCAATGAGAATATACTCATCTCTCTGGAATGCTGATGACTGGGCTACAA
GAGGTGGCCTTGTCAAGACAGATTGGACGCATGCTCCCTTCACGGCTTCC
TACAGAAACTTCAACGCTGATGCCTGTGTCTGGTCTAATGGAAAATCTTC
TTGCGCTTCAAGTTCACCTTCCTCTCCATCCAGCAGCAGTGCCTGGTTCT
CACAAGAGCTTGA
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