FC924991

Overview
NameFC924991
Unique NameFC924991
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length825
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3755 contig Ccv1_Contig3755:1..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.610e-47
Identity = 101/199 (50.75%), Postives = 130/199 (65.33%), Query Frame = 3
Query:  234 IGISPSVNIKAITTFTQKSTQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL--DGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            +G+S SV  K      +++  V A VT +      V+  +DD++D+FGK+LLLELVS+ELDPKTG E+  +KGFAH     K+G   YE+K  VP SFG VGA+LVENEHH+EM++ DI L   G  +  +     SWV SK  + + R FFT KSYLPSQTP G+  LR +EL  LRGDG  ERK  +R+YDYD YND
Sbjct:   57 VGVSTSVTTK------ERALTVTAIVTAQVPTSVYVARGLDDIQDLFGKTLLLELVSSELDPKTGRERERVKGFAHMTL--KEG--TYEAKMSVPASFGPVGAVLVENEHHREMFIKDIKLITGGDESTAITFDVASWVHSKFDDPEPRAFFTVKSYLPSQTPPGIEALRKKELETLRGDGHSERKFHERVYDYDTYND 245          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 8.995e-45
Identity = 96/187 (51.34%), Postives = 123/187 (65.78%), Query Frame = 3
Query:  288 STQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL---DGPRNGPV-NITCGSWVQSKHVNKQ----KRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            + +VKA  TIK +VG L++  +D ++D+ G+SL LELVS+ELD KTG EK T++ +AH   +D    + YE+ F+VP  FG +GAI+V NE  +EM+L DI L   DG  N  V  I C SWVQ K V  +    KRIFF NK+YLP QTP GL   R  +L   RGDG GER+  DR+YDYDVYND
Sbjct:   83 AVRVKAVATIKVTVGELINRSID-IRDLIGRSLSLELVSSELDAKTGKEKATVRSYAHNVDDDDHSVVTYEADFDVPSGFGPIGAIIVTNELRQEMFLEDINLTASDGAGNSTVLPIRCNSWVQPKSVGDEGTPSKRIFFANKTYLPGQTPAGLRSYRKNDLQQKRGDGTGEREADDRVYDYDVYND 268          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.994e-40
Identity = 90/190 (47.37%), Postives = 123/190 (64.74%), Query Frame = 3
Query:  294 QVKAFVTIKPSVGGLVSGF-----VDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL---DGPRNGPV-NITCGSWVQSKHVNKQ----KRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            +VKA  TIK +V GL++       +D+++D+ G+SL LELVS+EL+ KTG +K T+  +AH+  +D  G + YE+ F+VP  FG +GA++V NE  +EM+L D+ L   DG  N  V  I C SWVQ K    +    KRIFF  K+YLP QTP GL   R E+L   RG+G G+R+  DR+YDYDVYND
Sbjct:   97 KVKAVATIKVTVEGLLNSLRPSKAIDNIRDLIGRSLFLELVSSELEAKTGKKKATVHSYAHKVDDDDHGVVTYEADFDVPTGFGPIGAVVVTNELGQEMFLEDLNLTAGDGAGNSTVLPIRCNSWVQPKSSIDEGTPGKRIFFA-KAYLPGQTPAGLRSYREEDLKQKRGNGAGQREADDRVYDYDVYND 285          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.660e-38
Identity = 95/239 (39.75%), Postives = 138/239 (57.74%), Query Frame = 3
Query:  156 PFLRGNFHAFRALQSSSSIKNIPKIRIGISPSVNIKAITTFTQK----STQVKAFVTI----KPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKP------TIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN--GPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            P L G  H  R +  ++  + +P  R+  SPS  IK      ++       ++A +T+    K  +   V+G +D + DM G++++LEL+S ++ P+T  +KP      +IK +  + G   D H++Y ++F V   FGE GAI V N H++E +L  IV++G     GPV+  C SWVQS      KR+FF+NK YLPS+TP GL  LR +EL +LRGDG G RK  DRIYDY  YND
Sbjct:   31 PLLPGERHGRRKVVVAAISEEVP--RLAASPSSGIKGGGAGERRPAPEKVALRAALTVRRKQKEDIKEAVAGHLDALWDMVGRNVVLELISTKIHPRT--KKPMQSGRVSIKDWCQKRGAKGD-HVVYTAEFTVDADFGEPGAIAVANRHNREFFLESIVVEGGGLPCGPVHFACNSWVQSTRELPTKRVFFSNKPYLPSETPPGLRELREKELKDLRGDGTGVRKLSDRIYDYATYND 264          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.391e-37
Identity = 76/161 (47.20%), Postives = 103/161 (63.98%), Query Frame = 3
Query:  351 VDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKD---GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            +D + D  G+S+LLELVS E DP+ G  K +         + KD     ++Y ++F V   FGE GA+ V N H +E Y+  IV++G   GP + TC SWVQ   V++ +R+FF+N+ YLPS+TP GL  LR  EL +LRGDG GER+  DR+YDYDVYND
Sbjct:   90 LDALADRVGRSVLLELVSTETDPRKGTPKKSKPSALVGWFDKKDVKAERVVYTAEFAVDAGFGEPGAVTVLNRHQREFYIESIVVEGFPTGPAHFTCNSWVQPTRVSRDRRVFFSNRPYLPSETPPGLRELRLRELADLRGDGTGERRITDRVYDYDVYND 250          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.016e-37
Identity = 85/181 (46.96%), Postives = 107/181 (59.12%), Query Frame = 3
Query:  288 STQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL--DGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            +T++KA VT+  S    V  F+ D+  +    L ++LVS+ELDP+TG E+  I G    +G   D   +YE+ F+VP SFG +GA+ V N HH EM L DI +   G     V   C SW+   H    KR+FF   SYLPSQTP G+  LR  EL  LRG G GERK  DRIYDYDVYND
Sbjct:   85 ATEMKATVTVHMSKAAGVRDFLYDL--ILKTWLHVDLVSSELDPQTGQEREPISGAVKHSGRVDDEWDMYEATFKVPASFGPIGAVQVTNYHHSEMLLGDIEVFPTGQEESAVTFHCKSWIDPSHCTPDKRVFFPAHSYLPSQTPKGVEGLRKRELEILRGTGCGERKEHDRIYDYDVYND 263          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.538e-36
Identity = 82/185 (44.32%), Postives = 118/185 (63.78%), Query Frame = 3
Query:  294 QVKAFVTI----KPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPT----IKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            +V+A VT+    K  +   +   +D   D  G++++LEL+S +LDPKT   K +    +K ++ ++ + K   + Y ++F V  +FG  GAI V N+H KE +L  I ++G   GPV+  C SWVQS+  +  KRIFFTN+ YLP++TP+GL  LR +EL NLRGDG G RK  DRIYD+DVYND
Sbjct:   85 KVRAVVTVRNKNKEDLKETLVKHLDAFADKIGRNIVLELISTQLDPKTKLPKKSNAAVLKDWSKKS-KTKAERVHYTAEFTVDAAFGSPGAITVMNKHQKEFFLESITIEGFALGPVHFPCNSWVQSQKDHPDKRIFFTNQPYLPNETPSGLRVLREKELKNLRGDGSGVRKLSDRIYDFDVYND 268          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.008e-36
Identity = 77/162 (47.53%), Postives = 108/162 (66.67%), Query Frame = 3
Query:  351 VDDVKDMFGKSLLLELVSAELDPKTGAEKPT----IKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            +D   D  G++++LEL+S ++DPKT   K +    +K ++ ++   K   + Y ++F V  +FG  GAI V N+H KE +L  I ++G   GPV+  C SWVQS+  +  KRI FTN+ YLPS+TP+GL  LR +EL NLRG+G+GERK  DRIYDYDVYND
Sbjct:  114 LDAFTDKIGRNVVLELMSTQVDPKTNEPKKSKAAVLKDWSKKSNS-KAERVHYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPSKRILFTNQPYLPSETPSGLRTLREKELENLRGNGKGERKLSDRIYDYDVYND 274          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.318e-31
Identity = 77/185 (41.62%), Postives = 115/185 (62.16%), Query Frame = 3
Query:  285 KSTQVKAFVTIKPSV--GGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQ---GERKTQDRIYDYDVYND 824
            ++ +VK ++T +     G   S  +DD+ D+ G+SLL+EL+SA+ D     ++ T++ +A R   +      YE +FE+P  FG VGAI ++N++H++++L  + L  P  G +  TC SWV  K V+  KRIFF++KSYLPSQTP  L + R EEL  L+G  +   GE    +RIYDYDVYND
Sbjct:   71 QNIKVKGYITAQEEFLEGITWSRGLDDIADIRGRSLLVELISAKTD-----QRITVEDYAQRVWAEAPDEK-YECEFEMPEDFGPVGAIKIQNQYHRQLFLKGVELKLP-GGSITFTCESWVAPKSVDPTKRIFFSDKSYLPSQTPEPLKKYRKEELETLQGKNREEVGEFTKFERIYDYDVYND 248          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.669e-30
Identity = 96/258 (37.21%), Postives = 131/258 (50.78%), Query Frame = 3
Query:  141 VPLSKPFLRGNFHAFRALQSSSSIKNIPKIRIG----------ISPSVNIKAITTFTQKSTQ--VKAFVTIKPSVGGLVSGF--VDDVKD---------MFGKSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-----DGPRNGPVNIT-CGSWVQSKHVNKQKRIFF-TNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            VPLS+   R +F    A +  S+  N  + R+G          I   VN  A+TT  +   Q  +K  V +K +V   +  F   D+ K+         + G  L LELVS+ELDPKTG E   I G    + E +  + +YE+ F         GA+ + N HH EM L ++ +     D  ++  V +  C SW+   H +  KR FF   KSY+PSQTP G+ +LR  EL  LRG+G GERK  DRIYDYDVYND
Sbjct:   14 VPLSR---RASFLVAEARRKPST--NARRTRVGSTSTTTTTTTILTDVNGPALTTVAKPGHQYDLKQTVEMKATVSVHMKSFWWSDEKKERARDWAYDLILGSWLTLELVSSELDPKTGQEHDVISGKLKHSRETEKDYDLYEAIFTCRHRLAPSGAVRLVNYHHTEMLLGEVKIFPAGEDPTKSSAVTLFHCQSWIDPSHCSPDKRTFFPVEKSYIPSQTPKGVEKLRKSELEALRGNGCGERKKHDRIYDYDVYND 266          
The following BLAST results are available for this feature:
BLAST of FC924991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX23_HORVU9.610e-4750.75Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXC1_ORYSJ8.995e-4551.34Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOXC2_ORYSJ2.994e-4047.37Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX6_ORYSJ3.660e-3839.75Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX5_ORYSJ1.391e-3747.20Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX21_HORVU9.016e-3746.96Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX3_ARATH1.538e-3644.32Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX4_ARATH2.008e-3647.53Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX2_ARATH3.318e-3141.62Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX22_HORVU3.669e-3037.21Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA13FM1 TF Citrus clementina cDNA clone KN0AAP8YA13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924991 ID=FC924991; Name=FC924991; organism=Citrus clementina; type=EST; length=825bp
TCTCTATAAAAATAGTGGATTCTTCTGCACTTCAGCATCACAGAGCTAGC
CAAGAAAATTAAGTATCAAGCATATCCTATACTCCTGAAAGAATGTTGAA
GCCACAAGTCCATCAGTCTCATCAATCTCTCAAACCCCTAGTTCCATTAT
CCAAGCCATTTCTCCGGGGAAATTTTCATGCTTTTCGTGCACTTCAGTCA
AGTAGTTCAATAAAAAATATACCCAAAATTAGAATTGGGATATCTCCTAG
TGTGAATATCAAAGCAATAACAACTTTTACTCAAAAGTCTACCCAAGTTA
AGGCTTTTGTCACTATTAAACCCTCTGTTGGTGGTCTTGTCTCAGGTTTT
GTAGACGATGTAAAGGATATGTTTGGTAAATCACTCCTGCTGGAGCTTGT
TAGCGCTGAGCTTGATCCTAAGACGGGAGCAGAGAAGCCCACCATCAAAG
GTTTTGCACACAGAGCGGGCGAGGATAAGGACGGACACATAATATACGAG
TCAAAATTCGAAGTTCCACCAAGTTTTGGAGAAGTTGGTGCCATATTGGT
GGAAAATGAGCACCACAAAGAGATGTATTTGAATGATATTGTTCTGGATG
GTCCCCGGAATGGTCCTGTGAACATAACATGTGGTTCATGGGTTCAGTCA
AAGCACGTTAACAAACAGAAGAGAATTTTCTTTACAAACAAGTCATACTT
GCCTTCACAAACCCCTAATGGATTGACGAGGCTAAGAGCTGAAGAACTTC
TTAATCTGCGAGGAGACGGACAAGGAGAGCGCAAAACTCAAGATAGAATT
TACGATTATGACGTGTACAATGATC
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