FC925024

Overview
NameFC925024
Unique NameFC925024
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3662 contig Ccv1_Contig3662:1..664. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925024 vs. ExPASy Swiss-Prot
Match: FBL10_ARATH (F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana GN=FBL10 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.874e-40
Identity = 91/162 (56.17%), Postives = 116/162 (71.60%), Query Frame = 1 
Query:  139 RSLYLGSVAEKRGRSIHISDLEELLNGCHQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPS-ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLI 621
            R L LGSVAEK GRSI    LE+LLNGC  LE L LMFD+SL+LR    R++ L S++LT LE+G+I+S M+T+LL+      Q  N++  S +L  +Q+L LSVD ITDA+V  IS+ L SL  LD+RDAPL +PR   DLT+ GL +INQ+GKLKHLSLI
Sbjct:  139 RLLCLGSVAEKVGRSISRCALEDLLNGCSHLEVLALMFDLSLYLRPGDGRIFGLVSDRLTHLELGHITSRMMTQLLTSTEISGQDSNRVTTSTVLQNVQRLRLSVDCITDAVVKAISKSLPSLIDLDIRDAPLEDPRQVSDLTDFGLHEINQNGKLKHLSLI 300

HSP 2 Score: 24.6386 bits (52), Expect = 3.874e-40
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 2 
Query:  623 RSQEFLITYFRRVN 664
            RSQEF  TYFRRV+
Sbjct:  301 RSQEFHPTYFRRVS 314
The following BLAST results are available for this feature:
BLAST of FC925024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBL10_ARATH3.874e-4056.17F-box/LRR-repeat protein 10 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP6YP20FM1 TF Citrus clementina cDNA clone KN0AAP6YP20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925024 ID=FC925024; Name=FC925024; organism=Citrus clementina; type=EST; length=664bp
CTTTTATCCTCCTATAGACTAGTTGCATGCTGTGATCTAGAACGCATTGT
TGCTATAATTATGGTGAAATATATGAGTTTATTTAGCTTCACTTTATTAT
TAGCAACGTTGTTTTGGATTCTATGTCAACTTTCCTTCAGGTCCCTGTAC
TTGGGTTCTGTTGCTGAAAAGAGGGGACGGTCTATTCATATCTCTGATTT
GGAGGAGTTGCTCAATGGTTGTCATCAATTAGAAGCATTGATCCTAATGT
TTGACATCTCACTCTTTCTTCGTCATAACTTTGCTCGAGTTTGGGCTTTA
GCTTCAGAAAAGCTAACTTCTCTTGAGATCGGCTACATATCTTCTGTTAT
GGTGACCGAATTGCTTAGCCCAAATGTCGAACCCCATCAATCACCAAACC
AAATTCGACCATCCATATTGCCAGGCATTCAGAAGTTATGCCTTTCAGTT
GACTACATTACTGATGCTATGGTTGGCACAATATCACAAGGACTTGTCTC
CTTGACACATTTGGATCTTCGAGATGCTCCCCTTATAGAACCAAGGATAA
CATTTGATCTCACAAACTCTGGCCTTCAACAGATTAATCAACATGGGAAA
TTGAAACACCTCTCCCTCATCCCGGAGCCAGGAGTTCCTCATCACCTATT
TTAGAAGAGTTAAT
back to top