FC925029

Overview
NameFC925029
Unique NameFC925029
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14590 contig Ccv1_Contig14590:1..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925029 vs. ExPASy Swiss-Prot
Match: CI023_HUMAN (Alba-like protein C9orf23 OS=Homo sapiens GN=C9orf23 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 43/110 (39.09%), Postives = 56/110 (50.91%), Query Frame = 1
Query:  349 ELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWXXXXXXXXXXXTT--RHVSAITITLSRKELDSSSLGYQPP 672
            E+R+    ++RN +  A+  LE   A  VV   +GRA  K V  AE++KRRV GLHQ T    +   D W            T  RHV A+ + LSR  LD +  GYQPP
Sbjct:   27 EMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136          
BLAST of FC925029 vs. ExPASy Swiss-Prot
Match: CI023_MOUSE (Alba-like protein C9orf23 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.128e-13
Identity = 43/110 (39.09%), Postives = 55/110 (50.00%), Query Frame = 1
Query:  349 ELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWXXXXXXXXXXXTT--RHVSAITITLSRKELDSSSLGYQPP 672
            E+R+    ++RN +  A+  LE      VV   +GRA  K V  AE++KRRV GLHQ T    +   D W            T  RHV A+ + LSR  LD S  GYQPP
Sbjct:   27 EMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQPP 136          
BLAST of FC925029 vs. ExPASy Swiss-Prot
Match: CI023_BOVIN (Alba-like protein C9orf23 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.085e-13
Identity = 42/110 (38.18%), Postives = 56/110 (50.91%), Query Frame = 1
Query:  349 ELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWXXXXXXXXXXXTT--RHVSAITITLSRKELDSSSLGYQPP 672
            E+R+ A  ++RN +  A+  LE   A  VV   +GRA  K V  AE++KRRV GL+Q T    +   D W            T   HV A+ + LSR  LD +  GYQPP
Sbjct:   27 EMRVRAGSKIRNLLGLALERLEGGSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVLLSRDPLDPNEYGYQPP 136          
BLAST of FC925029 vs. ExPASy Swiss-Prot
Match: RPP25_RAT (Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 39/128 (30.47%), Postives = 60/128 (46.88%), Query Frame = 1
Query:  319 PKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWXXXXXXXXXXXT----------TRHVSAITITLSRKELDSSSLGYQPP 672
            P  + A     +R+    ++RN +++A + + +     +V    GRA  KTV  AE+LKRR+ GLHQ T      + +VW           T           ++V ++ I LS+  LD   LGYQPP
Sbjct:   27 PFADLAPGAVHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154          
BLAST of FC925029 vs. ExPASy Swiss-Prot
Match: RPP25_MOUSE (Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 39/128 (30.47%), Postives = 60/128 (46.88%), Query Frame = 1
Query:  319 PKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWXXXXXXXXXXXT----------TRHVSAITITLSRKELDSSSLGYQPP 672
            P  + A     +R+    ++RN +++A + + +     +V    GRA  KTV  AE+LKRR+ GLHQ T      + +VW           T           ++V ++ I LS+  LD   LGYQPP
Sbjct:   27 PFADLAPGAVHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154          
The following BLAST results are available for this feature:
BLAST of FC925029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CI023_HUMAN1.629e-1339.09Alba-like protein C9orf23 OS=Homo sapiens GN=C9orf... [more]
CI023_MOUSE2.128e-1339.09Alba-like protein C9orf23 homolog OS=Mus musculus ... [more]
CI023_BOVIN8.085e-1338.18Alba-like protein C9orf23 homolog OS=Bos taurus PE... [more]
RPP25_RAT5.794e-1130.47Ribonuclease P protein subunit p25 OS=Rattus norve... [more]
RPP25_MOUSE5.794e-1130.47Ribonuclease P protein subunit p25 OS=Mus musculus... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP1YO21FM1 TF Citrus clementina cDNA clone KN0AAP1YO21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925029 ID=FC925029; Name=FC925029; organism=Citrus clementina; type=EST; length=765bp
CAAGATATCAACGGCATGCCCAATCAGTAATGAAGATCTTCAGAGTTGGG
CCCACGTTCAAAAACCCTAACTCGCGCAAGATAAATATCCAAAAAAAGAG
CGCGCCACTGGCGGCCTCTTACAAATTCGGCGAAGCAAGGAAGAAAAATT
ATTTGATTTTTTGTGAAATAAACGGAAAAATAAAAATATAAAAACACAAA
AATTCAAATCCAATCTAGCGAAAGAGAACGAGCAATCGAGCAGAGTCCAA
CCAACGACACTCCGTTTTACCGCACAGAGAGCGAGAGCAAGATGGATCGA
TACCAGAAGGTGGAGAAGCCAAAGACGGAGACGGCCATTAGCGAGAATGA
ATTGAGGATAACAGCTCAAGGCAGACTCAGGAATTACATTTCTTATGCTA
TTTCTCTGCTTGAGGAGAAAGGCGCCAATGAGGTTGTCCTCAAAGCTACT
GGTAGAGCCATCAACAAGACTGTGATGATTGCTGAATTACTAAAGAGGAG
GGTTGTTGGTCTCCATCAGAACACGTCGACAGGATCTATTGATATAACTG
ATGTGTGGGAGCCACTAGAGGAAGGGCTTCTTCCACTAGAAACCACTCGT
CATGTCTCAGCTATCACAATTACTTTGTCAAGGAAGGAGTTGGATTCATC
TTCCTTAGGATACCAACCACCAATCCCAACTGATCAAGTGAAGCCATTGG
CTGATTATGATGATGGACGAGCCTTGCATGGCATGCGAGACAAGGGACGT
CTTCAAGCCAGGGAT
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