FC925031

Overview
NameFC925031
Unique NameFC925031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15027 contig Ccv1_Contig15027:29..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925031 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.622e-37
Identity = 71/159 (44.65%), Postives = 103/159 (64.78%), Query Frame = 2
Query:  218 LSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTETNLKHAGFNTWEKLILKGS 694
            L C +WR  VETNN+  W T+PE+CADYV  YM+G  Y+++ + V++EA  +A+S+ L  DG+D+W+FD+DET L NLPYY+ + +G++ ++   F++WV  G A                G K+  LTGR E  R+VT  NL +AGF+ W KLIL+GS
Sbjct:   41 LKCTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDGRDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLGFKVFLLTGRSERHRSVTVENLMNAGFHDWHKLILRGS 199          
BLAST of FC925031 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.794e-36
Identity = 73/159 (45.91%), Postives = 102/159 (64.15%), Query Frame = 2
Query:  212 PGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTETNLKHAGFNTWEKLILK 688
            P + C SWRL VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V  +A  +A+ L +    KD +VF ID T L N+PYY K+G+GV+ +N T+++EWVN G A                G KI+FL+GR  D++ VTE NLK AG++TWEKLILK
Sbjct:   38 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILK 194          
BLAST of FC925031 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.794e-36
Identity = 73/159 (45.91%), Postives = 102/159 (64.15%), Query Frame = 2
Query:  212 PGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTETNLKHAGFNTWEKLILK 688
            P + C SWRL VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V  +A  +A+ L +    KD +VF ID T L N+PYY K+G+GV+ +N T+++EWVN G A                G KI+FL+GR  D++ VTE NLK AG++TWEKLILK
Sbjct:   35 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILK 191          
BLAST of FC925031 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.501e-32
Identity = 71/166 (42.77%), Postives = 103/166 (62.05%), Query Frame = 2
Query:  191 GSRNNDVPGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTETNLKHAGFNTWEKLILK 688
            G R+++V    C S+RL VE +N+  + T+PE+C +    Y+ G+Q+R DS+ V  +A  +A    +  +  DI++F ID T L N+PYY K+G+GV+ +N T+++EWVN G A                G KIVFL+GR  D+  VTE NLK AGF+TWE+LILK
Sbjct:   35 GERSSEV---KCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHTWEQLILK 195          
BLAST of FC925031 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.784e-27
Identity = 63/165 (38.18%), Postives = 95/165 (57.58%), Query Frame = 2
Query:  221 SCLSWRLGVETNNVIGWATVPEKCADYVGHYML-GQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTG-KAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTETNLKHAGFNTWEKLILKGSSHSRR 709
            +C SW LGVET+N+I + TVP  C DYV  Y++  +QY+ DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G+G +  +P  +  W+ TG                   GI+ + L+ R +  +NVT  NL+ AG   W+ LILK +  + R
Sbjct:   51 NCRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIELGIEPIILSDRWKLWKNVTLDNLEAAGVTYWKHLILKPNGSNLR 215          
BLAST of FC925031 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.206e-24
Identity = 58/158 (36.71%), Postives = 89/158 (56.33%), Query Frame = 2
Query:  221 SCLSWRLGVETNNVIGWATVPEKCADYVGHYML-GQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKA-XXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTETNLKHAGFNTWEKLILK 688
            +C SW LGVET+N+I + TVP  C  YV  Y++  +QY+ DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G+G +   P  +  W+ +G++                 GI+ + ++ R +    VT  NLK  G   W+ LILK
Sbjct:   56 NCRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLELGIEPIIISDRWKKLSEVTVENLKAVGVTKWKHLILK 213          
The following BLAST results are available for this feature:
BLAST of FC925031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC1.622e-3744.65Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSPA_SOYBN1.794e-3645.91Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
S25K_SOYBN1.794e-3645.91Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSPB_SOYBN3.501e-3242.77Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
VSP2_ARATH5.784e-2738.18Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSP1_ARATH1.206e-2436.71Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP1YO23FM1 TF Citrus clementina cDNA clone KN0AAP1YO23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925031 ID=FC925031; Name=FC925031; organism=Citrus clementina; type=EST; length=774bp
CAATATTACAGTTGTAATGAGCATGGGAGGGGTGTCACTGCCATTATTCT
TTTTTCTGGCTACCATATCAGCAACATCCCATGGATTTAGCATGGACATC
CGCCATCTTTTTCTGGCTACCATACCAGCAACATCCCATGGATTTAGCAT
GGACATCCCCCATCAGATTCATCTTCTCCGACCGAAAGCCGGTTCCCGGA
ACAACGATGTGCCCGGCTTGTCCTGCCTGAGTTGGCGACTCGGAGTGGAA
ACTAATAACGTTATAGGATGGGCGACTGTTCCCGAAAAATGTGCAGACTA
CGTGGGGCATTACATGTTAGGCCAGCAGTACCGCCTGGACTCTGAAGTGG
TTGCTAATGAGGCCATTCTCCATGCTCAGAGCCTCACGCTTGCTGGCGAC
GGCAAGGACATTTGGGTTTTCGACATAGATGAAACCTCGCTATGTAATTT
GCCATATTATGCTAAGAATGGATTCGGGGTGAAGCCGTACAACCCTACTA
TGTTTAATGAATGGGTTAACACCGGAAAAGCACCACCGCTGCCAGAGAGC
CTTAAGCTTTACAAAAAATTATTATTGCTTGGAATTAAGATTGTATTCCT
CACGGGAAGACCAGAAGATCAGAGAAATGTTACAGAAACTAATTTAAAGC
ATGCTGGATTCAACACTTGGGAGAAGCTCATCCTCAAGGGATCATCTCAT
TCACGAAGAAACAGCAGTGGTGTACAAATCAAGTGAAAGAAAGAAGCTTG
AGAAGAAAAGGTACAGAATTATTG
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