FC925034

Overview
NameFC925034
Unique NameFC925034
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925034 vs. ExPASy Swiss-Prot
Match: YMF16_ARATH (Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana GN=YMF16 PE=2 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 2.164e-67
Identity = 131/158 (82.91%), Postives = 132/158 (83.54%), Query Frame = 3
Query:    3 KYNRXXXXXXXXXXXXXXXXXXWVVPNVWHFLYFVGATSTNLLMIKLQPKIYDYIMLTVRILFISSVCSQVPVIVICLLELRGLSVETFTNNRRFLMVFSLFTAALSTPPDIWCQIVACFLIYLIIELAIFVALIVQVLEEGWTSGMRESGSIEKKKK 476
            KYNR                  WVVPNVWHFLYFVGATSTN LMIKLQPKIYDYIMLTVRI FISSVCSQVPVIVICLLE RGLS+ETFTNNRRFLMVFSL TAAL TPPDIWCQIVACFLI LIIELAIFVALIVQV EEGWTSGMRESGSIEKK K
Sbjct:  110 KYNRFFYLSGFCFFLFLFLTLSWVVPNVWHFLYFVGATSTNSLMIKLQPKIYDYIMLTVRISFISSVCSQVPVIVICLLEPRGLSLETFTNNRRFLMVFSLLTAALFTPPDIWCQIVACFLISLIIELAIFVALIVQVREEGWTSGMRESGSIEKKNK 267          
BLAST of FC925034 vs. ExPASy Swiss-Prot
Match: YMF16_MARPO (Uncharacterized tatC-like protein ymf16 OS=Marchantia polymorpha GN=YMF16 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.664e-41
Identity = 84/141 (59.57%), Postives = 99/141 (70.21%), Query Frame = 3
Query:    3 KYNRXXXXXXXXXXXXXXXXXXWVVPNVWHFLYFVGATSTNLLMIKLQPKIYDYIMLTVRILFISSVCSQVPVIVICLLELRGLSVETFTNNRRFLMVFSLFTAALSTPPDIWCQIVACFLIYLIIELAIFVALIVQVLEE 425
            KYN+                  W+VPNVWHFLY +  TSTNLL+IKLQPKI+DYIMLTVRILFISS+CSQVPV+VICLLE +G  V+TF  NRRF   F  F ++    PDIWCQI+AC  IY IIEL IF ALI+QV ++
Sbjct:  102 KYNKLFYLSGFCFFLFFFVTFVWIVPNVWHFLYKLSTTSTNLLIIKLQPKIFDYIMLTVRILFISSICSQVPVLVICLLESKG--VKTFIKNRRFFYSFFAFHSSFFYTPDIWCQIIACLPIYFIIELTIFYALIIQVYKK 240          
BLAST of FC925034 vs. ExPASy Swiss-Prot
Match: YMF16_RECAM (Uncharacterized tatC-like protein ymf16 OS=Reclinomonas americana GN=YMF16 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.560e-12
Identity = 33/107 (30.84%), Postives = 61/107 (57.01%), Query Frame = 3
Query:   93 FLYFVGATSTNLLMIKLQPKIYDYIMLTVRILFISSVCSQVPVIVICLLELRGLSVETFTNNRRFLMVFSLFTAALSTPPDIWCQIVACFLIYLIIELAIFVALIVQ 413
            FL F       L  I+LQ KI++Y++L  +++F  S+C Q+PV+++ L ++   +     + RRF+ +F    AA+ +PPDI  Q +    + L  E+++F   ++Q
Sbjct:  129 FLGFQKLGKDQLFTIELQAKIHEYLILNTKLIFSLSICFQLPVLILFLFKIYPKTYLWLIHKRRFIYLFFFILAAILSPPDILSQFILVIPLILFFEISLFCIKLIQ 235          
The following BLAST results are available for this feature:
BLAST of FC925034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YMF16_ARATH2.164e-6782.91Uncharacterized tatC-like protein ymf16 OS=Arabido... [more]
YMF16_MARPO2.664e-4159.57Uncharacterized tatC-like protein ymf16 OS=Marchan... [more]
YMF16_RECAM7.560e-1230.84Uncharacterized tatC-like protein ymf16 OS=Reclino... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YB04FM1 TF Citrus clementina cDNA clone KN0AAP8YB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925034 ID=FC925034; Name=FC925034; organism=Citrus clementina; type=EST; length=481bp
CGAAATACAATCGATTCTTCTATTTAAGTGGTTCTTGCTTTTTCTTCTTC
CTGTTCCTAACTTTTTCCTGGGTAGTTCCCAATGTTTGGCACTTTCTATA
CTTCGTGGGTGCAACATCAACAAATTTGCTCATGATCAAGTTACAACCTA
AGATCTATGACTATATTATGTTAACTGTTCGTATTTTGTTCATTTCATCG
GTATGCTCTCAGGTACCTGTAATTGTGATCTGTTTGCTAGAACTAAGGGG
TCTTTCCGTGGAAACCTTCACAAACAATCGTCGTTTTTTGATGGTTTTTT
CGCTTTTCACAGCTGCTCTTTCCACACCTCCGGATATCTGGTGCCAAATT
GTCGCCTGTTTCCTTATTTATTTGATAATAGAGTTGGCTATCTTTGTGGC
ATTAATTGTACAAGTTCTTGAAGAAGGCTGGACGAGTGGAATGAGGGAGA
GCGGCTCGATCGAAAAAAAAAAAAAAAAAAA
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