FC925042

Overview
NameFC925042
Unique NameFC925042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length791
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3759 contig Ccv1_Contig3759:1..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925042 vs. ExPASy Swiss-Prot
Match: IPO5_MOUSE (Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 8.392e-37
Identity = 78/203 (38.42%), Postives = 123/203 (60.59%), Query Frame = 2
Query:    2 VGDCLGTLTKTFRASFLTFFDELSSYLTPMWGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDEHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAE 610
            V D L ++  +++   L +F++L   +  +    +   +R+  +CIFDD++EHC  A+ KY + ++  +L+   D  P+VRQAA YG+GV A+FGG  ++P   +AL  L  VI+ P A   +NV A +N +SA+GKI +F  D ++  +V+P WLS LPL  D  EA    + LC ++E +   +LGPN+  LPKI +I AE
Sbjct:  842 VSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPQRPWPDRQWGLCIFDDIVEHCSPASFKYAEYFISPMLQYVCDNSPEVRQAAAYGLGVMAQFGGDNYRPFCTDALPLLVRVIQAPEAKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFSYLCDLIESNHPIVLGPNNTNLPKIFSIIAE 1044          
BLAST of FC925042 vs. ExPASy Swiss-Prot
Match: IPO5_HUMAN (Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4)

HSP 1 Score: 149.828 bits (377), Expect = 1.583e-35
Identity = 78/203 (38.42%), Postives = 122/203 (60.10%), Query Frame = 2
Query:    2 VGDCLGTLTKTFRASFLTFFDELSSYLTPMWGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDEHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAE 610
            V D L ++  +++   L +F++L   +  +    +   +R+  +CIFDDV+EHC  A+ KY + +L  +L+   D  P+VRQAA YG+GV A++GG  ++P   EAL  L  VI+  ++   +NV A +N +SA+GKI +F  D ++  +V+P WLS LPL  D  EA      LC ++E +   +LGPN+  LPKI +I AE
Sbjct:  842 VSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIFDDVIEHCSPASFKYAEYFLRPMLQYVCDNSPEVRQAAAYGLGVMAQYGGDNYRPFCTEALPLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAE 1044          
BLAST of FC925042 vs. ExPASy Swiss-Prot
Match: RNBP6_HUMAN (Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.605e-35
Identity = 76/203 (37.44%), Postives = 122/203 (60.10%), Query Frame = 2
Query:    2 VGDCLGTLTKTFRASFLTFFDELSSYLTPMWGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDEHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAE 610
            V D L +L  T++   L +F++L   +  +    +   +R+  +CIFDD++EHC   + KY + +   +L    D +P+VRQAA YG+GV A+FGG  ++ L  EA+  L  VI+  N+    NV+A +N +SA+GKI +F  + ++  +V+P WLS LPL  D  EA    + LC ++E +   ++GPN+  LPKI++I AE
Sbjct:  850 VSDILHSLFSTYKEKILPWFEQLLPLIVNLICSSRPWPDRQWGLCIFDDIIEHCSPTSFKYVEYFRWPMLLNMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAVPLLVKVIKCANSKTKKNVIATENCISAIGKILKFKPNCVNVDEVLPHWLSWLPLHEDKEEAIQTLSFLCDLIESNHPVVIGPNNSNLPKIISIIAE 1052          
BLAST of FC925042 vs. ExPASy Swiss-Prot
Match: RNBP6_MOUSE (Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE=2 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 1.026e-34
Identity = 76/203 (37.44%), Postives = 121/203 (59.61%), Query Frame = 2
Query:    2 VGDCLGTLTKTFRASFLTFFDELSSYLTPMWGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDEHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAE 610
            V D L +L  T++   L +F++L   +  +    +   +R+  +CIFDD++EHC   + KY + +   +L    D +P+VRQAA YG+GV A+FGG  ++ L  EA+  L  VI+  N+    NV+A +N +SA+GKI +F  + ++  +V+P WLS LPL  D  EA      LC ++E +   ++GPN+  LPKI++I AE
Sbjct:  850 VSDILHSLFSTYKEKILPWFEQLLPLIVNLICSSRPWPDRQWGLCIFDDIIEHCSPTSFKYVEYFRWPMLLNMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAVPLLVKVIKCANSKTKKNVIATENCISAIGKILKFKPNCVNVDEVLPHWLSWLPLHEDKEEAIQTLNFLCDLIESNHPVVIGPNNSNLPKIISIIAE 1052          
BLAST of FC925042 vs. ExPASy Swiss-Prot
Match: IMB3_SCHPO (Importin subunit beta-3 OS=Schizosaccharomyces pombe GN=sal3 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.699e-21
Identity = 61/210 (29.05%), Postives = 106/210 (50.48%), Query Frame = 2
Query:    2 VGDCLGTLTKTFRASFLTFFDELSSYLTP-MWGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDEHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI-DAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGG 625
            +      + K  + +F  F++ L  Y+   + G D  A++   A+C+ DD++E     +  Y D +LP+L E      P++RQAA YGIGV A+ GG ++  +   AL  L  ++  P+A   + + A +N   A+ KIC+F    + D  +VV  W++ LP+  D  +A   +  L  ++E++   +       +P I+TI AE    G
Sbjct:  847 INKTFSVVLKIHKTAFCPFWERLLPYMDGFLSGNDTVAKQW--ALCMMDDLIEFTGPDSWNYKDHFLPYLAEGIQSSEPEIRQAASYGIGVAAQHGGELYAEICSSALPALFKMLELPDARDEEQIYATENICVAICKICRFCSQRVQDLDKVVTYWINTLPVTHDEDDAPYAYTFLAELMEQNHVAVA----SQMPTIITILAETFASG 1050          
BLAST of FC925042 vs. ExPASy Swiss-Prot
Match: IPO5_DICDI (Probable importin-5 homolog OS=Dictyostelium discoideum GN=DDB_G0291650 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.441e-12
Identity = 53/173 (30.64%), Postives = 91/173 (52.60%), Query Frame = 2
Query:  107 TAEERRIAICIFDDVMEHCREAALKYYDTYL-PFLLEACNDEHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALH---SDNVMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFA 607
            + E +   ICI DD++E+  + A + Y   + P +     +  P + Q+AV+GIG+ AE G   F P + E+L  ++ VI   N++     D + A DNA+SA+G+I       +  +  Q +  WLS LP++ D  EA  +   LC+++     +I+    QY+ K++ I A
Sbjct:  850 SVEIKTSMICILDDLIENGGQKAFELYPHIIKPMMNCTLPNLDPSLIQSAVFGIGLAAENGKDYFTPFLMESLQLINNVIVSVNSVQEQDDDLIAARDNAISAMGRIITNLPQHLGNNFPQTIALWLSYLPIQDD-GEAGSIIKSLCTLIRDFSQQIM--TQQYIVKVLEIIA 1019          
The following BLAST results are available for this feature:
BLAST of FC925042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
IPO5_MOUSE8.392e-3738.42Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3[more]
IPO5_HUMAN1.583e-3538.42Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4[more]
RNBP6_HUMAN4.605e-3537.44Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE... [more]
RNBP6_MOUSE1.026e-3437.44Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE... [more]
IMB3_SCHPO1.699e-2129.05Importin subunit beta-3 OS=Schizosaccharomyces pom... [more]
IPO5_DICDI1.441e-1230.64Probable importin-5 homolog OS=Dictyostelium disco... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YB14FM1 TF Citrus clementina cDNA clone KN0AAP8YB14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925042 ID=FC925042; Name=FC925042; organism=Citrus clementina; type=EST; length=791bp
GGTTGGCGATTGCTTGGGAACATTGACCAAAACATTCAGAGCCTCTTTCT
TGACTTTCTTTGACGAGCTCTCTTCTTACTTGACACCTATGTGGGGCAAG
GATAAAACAGCAGAAGAGAGGAGAATTGCCATTTGTATATTCGATGATGT
TATGGAGCACTGCCGTGAAGCTGCACTCAAATACTATGACACTTATCTTC
CTTTCTTACTGGAAGCCTGCAATGACGAACATCCAGATGTTCGTCAGGCT
GCGGTTTATGGGATTGGAGTTTGTGCTGAGTTCGGTGGATCTGTTTTCAA
ACCCCTTGTTGGGGAAGCCCTTTCCAGATTAGATTTTGTGATAAGGCACC
CAAATGCGCTGCATTCAGACAATGTAATGGCATATGACAATGCTGTTTCA
GCTCTCGGAAAGATTTGCCAATTCCATCGGGATAGTATAGATGCAGCTCA
GGTTGTCCCTGCCTGGTTAAGTTGCTTGCCTCTAAAAGGTGACTTGATTG
AGGCCAAGGTTGTGCATGCCCAGCTTTGTTCAATGGTGGAAAGGTCAGAT
GGGGAAATTTTAGGGCCTAACCATCAATACCTGCCCAAAATAGTCACAAT
CTTTGCAGAGGTTTTATGTGGGGGTAGGGATCTGGTGACTGAGCAAACTG
CCAGCAGAATGATTAATCTGTTAAGGCAACTTCAACAATCATTACCACCC
TCCACTCTTGCATCAACATGGTCATCCCTGCAGCCCCAGCAGCAGCTTGC
TTTGCAATCCATCCTCTCATCTTAAATTCTTTTGCTGTTTT
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