FC925049

Overview
NameFC925049
Unique NameFC925049
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3760 contig Ccv1_Contig3760:1..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925049 vs. ExPASy Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.073e-50
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 3 
Query:  111 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 407
            EADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP++TRLN
Sbjct:   18 EADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLN 116
[Close]
BLAST of FC925049 vs. ExPASy Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 1.941e-48
Identity = 90/99 (90.91%), Postives = 96/99 (96.97%), Query Frame = 3 
Query:  111 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 407
            EADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DGTKRLCHIRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP++ RLN
Sbjct:   18 EADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLN 116
[Close]
BLAST of FC925049 vs. ExPASy Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 7.392e-40
Identity = 78/99 (78.79%), Postives = 85/99 (85.86%), Query Frame = 3 
Query:  111 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 407
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of FC925049 vs. ExPASy Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ay PE=2 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 7.392e-40
Identity = 78/99 (78.79%), Postives = 85/99 (85.86%), Query Frame = 3 
Query:  111 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 407
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of FC925049 vs. ExPASy Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 7.392e-40
Identity = 78/99 (78.79%), Postives = 85/99 (85.86%), Query Frame = 3 
Query:  111 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 407
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of FC925049 vs. ExPASy Swiss-Prot
Match: IF1AY_PANTR (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes GN=EIF1AY PE=2 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 1.647e-39
Identity = 77/99 (77.78%), Postives = 85/99 (85.86%), Query Frame = 3 
Query:  111 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 407
            E + EKRELVFKEDGQEYAQV++MLGNGR EA+C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of FC925049 vs. ExPASy Swiss-Prot
Match: IF1AY_HUMAN (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Homo sapiens GN=EIF1AY PE=1 SV=4)

HSP 1 Score: 162.54 bits (410), Expect = 1.647e-39
Identity = 77/99 (77.78%), Postives = 85/99 (85.86%), Query Frame = 3 
Query:  111 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 407
            E + EKRELVFKEDGQEYAQV++MLGNGR EA+C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of FC925049 vs. ExPASy Swiss-Prot
Match: IF1A_RAT (Eukaryotic translation initiation factor 1A OS=Rattus norvegicus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 2.151e-39
Identity = 76/99 (76.77%), Postives = 85/99 (85.86%), Query Frame = 3 
Query:  111 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 407
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG +RLCHIRGK+ KKVWI   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of FC925049 vs. ExPASy Swiss-Prot
Match: IF1A_MOUSE (Eukaryotic translation initiation factor 1A OS=Mus musculus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 2.151e-39
Identity = 76/99 (76.77%), Postives = 85/99 (85.86%), Query Frame = 3 
Query:  111 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 407
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG +RLCHIRGK+ KKVWI   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of FC925049 vs. ExPASy Swiss-Prot
Match: IF1A_RABIT (Eukaryotic translation initiation factor 1A OS=Oryctolagus cuniculus GN=EIF1A PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 5.857e-37
Identity = 75/99 (75.76%), Postives = 83/99 (83.84%), Query Frame = 3 
Query:  111 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 407
            E + EKRELVFKEDGQEYAQV++MLGNGR EAM  DG KRL HIRGK+ KKVWI   DIILVGLR+YQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKLRKKVWINTSDIILVGLREYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
The following BLAST results are available for this feature:
BLAST of FC925049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IF1A_ONOVI2.073e-5095.96Eukaryotic translation initiation factor 1A OS=Ono... [more]
IF1A_WHEAT1.941e-4890.91Eukaryotic translation initiation factor 1A OS=Tri... [more]
IF1AX_PONAB7.392e-4078.79Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AX_MOUSE7.392e-4078.79Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AX_HUMAN7.392e-4078.79Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AY_PANTR1.647e-3977.78Eukaryotic translation initiation factor 1A, Y-chr... [more]
IF1AY_HUMAN1.647e-3977.78Eukaryotic translation initiation factor 1A, Y-chr... [more]
IF1A_RAT2.151e-3976.77Eukaryotic translation initiation factor 1A OS=Rat... [more]
IF1A_MOUSE2.151e-3976.77Eukaryotic translation initiation factor 1A OS=Mus... [more]
IF1A_RABIT5.857e-3775.76Eukaryotic translation initiation factor 1A OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB18FM1 TF Citrus clementina cDNA clone KN0AAP8YB18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925049 ID=FC925049; Name=FC925049; organism=Citrus clementina; type=EST; length=646bp
TTCAATCTTGCTGCTTTTTAACTCTCCGACTCCACCTCTCCCCCAAAGAA
TTAGAAACCATGCCGAAGAATAAGGGAAAGGGAGGAAAGAACAGGAAGAG
GGGAAAGAATGAAGCTGACGACGAGAAGCGTGAGCTTGTCTTCAAGGAAG
ACGGACAGGAATATGCCCAAGTCCTTCGTATGCTCGGCAATGGTCGGTGT
GAAGCTATGTGCATCGATGGAACCAAGCGTCTTTGCCACATCCGTGGGAA
GATGCACAAAAAGGTTTGGATTGCAGCTGGTGATATAATACTTGTTGGCC
TACGTGATTATCAGGATGACAAGGCTGATGTCATCCTCAAGTATATGCCC
GACGAGGCAAGGCTTCTGAAGGCTTATGGTGAACTTCCAGAGAGTACCCG
TCTCAATGAGGGCATTGCTGGTGGTCTTGATGAAGAGGATGATGGCGCTG
ATAATGATTACATCGAGTTTGAAGACGAAGATATTGATAAGATCTAGGCT
CCGAGAATCGACTCTGTCTGGGGTTTATGTTCAATATTTAGCAAAAATGG
AGTATGCCAATGTATTGGTTACTTAAAAGCTGAAAATATGTGTTTTGCAG
CTTATATATTTGGAATTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA
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