FC925051

Overview
NameFC925051
Unique NameFC925051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3761 contig Ccv1_Contig3761:1..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 427.943 bits (1099), Expect = 3.194e-119
Identity = 207/250 (82.80%), Postives = 222/250 (88.80%), Query Frame = 2
Query:   32 AATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXXLPP--KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTPL 769
            A TS AVLNGL SSF+ GG KSQALLA     RV           L    KKSWIPAV+GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKRWVDFF+P+SQSVEWATPWS+TAENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLKVAEIKHARLAM+AMLIFYFEAGQGKTPL
Sbjct:    2 ATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAGQGKTPL 251          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 422.935 bits (1086), Expect = 1.027e-117
Identity = 202/251 (80.48%), Postives = 223/251 (88.84%), Query Frame = 2
Query:   26 MAAATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXX-LPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTPL 769
            M   ++ AVLNGL SSF+ GGKK+QALL    T RVT           + PKKSWIPAVK GGNL++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF+ +SQS++WATPWS+TAENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLK+AEIKH+RLAM+AMLIFYFEAGQGKTPL
Sbjct:    1 MTTTSATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAGQGKTPL 251          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 414.846 bits (1065), Expect = 2.798e-115
Identity = 201/256 (78.52%), Postives = 224/256 (87.50%), Query Frame = 2
Query:   26 MAAATSG-AVLNGLGSSFINGGKKS-QALLAGTNRV------TXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTPL 769
            MAAATS  A++NG  S F++GGKKS Q+LL   ++V      T            PKKSWIPAVKGGGN ++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AV+GIFVGQAW+GIPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVEWATPWSRTAENF+N+TGEQGYPGGKFFDPL LAGTI +GVY PDT+KL+RLK+AEIKHARLAM+AMLIFYFEAGQGKTPL
Sbjct:    1 MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPL 256          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.522e-28
Identity = 74/200 (37.00%), Postives = 101/200 (50.50%), Query Frame = 2
Query:  164 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 745
            P +  W P          PEWLDGSLPGD+GFDPLGLG DP  LKW  +AEL+H RWAM    GIF+ +  + I       W+ AG            +L   +L+L+GW E +RW D   P   + +   P ++          + GYPGG +FDPL        G       K+  L+  EIK+ RLAM+A++  +F+
Sbjct:   63 PDRPLWFPGSTP------PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT---DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPL--------GWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQ 239          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.865e-28
Identity = 78/247 (31.58%), Postives = 118/247 (47.77%), Query Frame = 2
Query:   23 SMAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 745
            S ++  +G+++    +SF+ GG++ +     T               P +  W P          P WLDGSLPGD+GFDPLGL  DP  L+W ++AEL+H RWAM    GIF+ +  + I       W+ AG            +L   +L+L+GW E +RW D   P   + +   P ++          + GYPGG +FDPL        G       K+  L+  EIK+ RLAM+A++  +F+
Sbjct:   17 SPSSRRNGSIVGTTKASFL-GGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTP------PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFT---DTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPL--------GWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQ 239          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.070e-26
Identity = 99/308 (32.14%), Postives = 132/308 (42.86%), Query Frame = 2
Query:   32 AATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKS----------WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPL 769
            AATS A      +S I G + +  +  G+ R T           P K +          W P        I+P+WLDGSL GDYGFDP GLGK   +L++                                           +RE ELIHGRWAM A +G    +  +G+ W +AG        +  G   PFS  +L+  ++L++G++E +R     N E  S                   ++ YPGGKFFDPL LA          D EK  +L++AEIKHARLAMVA L F  + A  GK PL
Sbjct:    2 AATSAAAA---AASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGA------ISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----NAELDS------------------EKRLYPGGKFFDPLGLAA---------DPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 268          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.970e-24
Identity = 91/265 (34.34%), Postives = 117/265 (44.15%), Query Frame = 2
Query:  164 PPKKS-----------WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPL 769
            PPKKS           W P    G N   PEWLDGS+ GD GFDP GLGK   +L++                                           +RE ELIHGRWAM   +G    +A +GI W +AG           G   PFS  +L+  ++L++G++E +R  +  +PE +                       YPGG +FDPL LA          D EKLD LK+AEIKH+RLAMVA LIF  +A   GK P+
Sbjct:   43 PPKKSRQVQDDGDRLVWFP----GAN--PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSEL-DPEKRI----------------------YPGG-YFDPLGLAA---------DPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPV 268          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 84/249 (33.73%), Postives = 111/249 (44.58%), Query Frame = 2
Query:  179 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPL 769
            W P  K      +PE+LDGSL GDYGFDP GLGK   +L++                                           +RE ELIHGRWAM A +G    +  +G+ W +AG        +  G   PFS  +L+  ++L++G++E +R     N E  S                   ++ YPGGKFFDPL LA          D  K  +L++AEIKHARLAMV  L F  + A  GK PL
Sbjct:   55 WFPGAK------SPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----NAELDS------------------EKRLYPGGKFFDPLGLAS---------DPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPL 265          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.602e-23
Identity = 73/206 (35.44%), Postives = 105/206 (50.97%), Query Frame = 2
Query:  170 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTP 766
            K  W+P       L +P +L GSLPGD GFDPLGL +DP  L+W+ +AEL++GRWAM  V G+ + + ++ I       W+ AG +       S  +L   + +L  +VE +RW D  NP S + +         + ++   GE GYPGG  F+PL  A T++              K  EI + RLAM+A L F  +    GK P
Sbjct:   53 KGEWLPG------LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFA---SSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPAGEVGYPGG-IFNPLNFAPTLE-------------AKEKEIANGRLAMLAFLGFIIQHNVTGKGP 229          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.780e-22
Identity = 72/206 (34.95%), Postives = 104/206 (50.49%), Query Frame = 2
Query:  170 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTP 766
            K  W+P       L +P++L GSL GD GFDPLGL +DP  LKW+ +AEL++GRWAM  V G+ + + ++ I       W++AG +       S  +L   + +L  +VE +RW D  NP S + +         + ++   GE GYPGG  F+PL  A T                K  E+ + RLAM+A L F  +    GK P
Sbjct:   54 KGEWLPG------LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPKGEVGYPGG-IFNPLNFAPT-------------QEAKEKELANGRLAMLAFLGFVVQHNVTGKGP 230          
The following BLAST results are available for this feature:
BLAST of FC925051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB4A_SOLLC3.194e-11982.80Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC1.027e-11780.48Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL2.798e-11578.52Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB12_PETHY1.522e-2837.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC9.865e-2831.58Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB4A_ARATH7.070e-2632.14Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4C_ARATH2.970e-2434.34Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB4B_ARATH3.284e-2333.73Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB24_PEA5.602e-2335.44Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH2.780e-2234.95Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB19FM1 TF Citrus clementina cDNA clone KN0AAP8YB19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925051 ID=FC925051; Name=FC925051; organism=Citrus clementina; type=EST; length=819bp
CAGAAGTCAAGTAGATATCATATCTATGGCGGCTGCAACATCCGGGGCTG
TGTTAAACGGATTGGGTTCTTCATTCATAAATGGTGGCAAGAAGAGCCAG
GCTCTTTTGGCTGGCACGAATAGAGTGACAAGTTCTAAAAAGTCAGTTGT
TGTAGCTGCTCTTCCACCTAAAAAATCTTGGATTCCTGCTGTTAAAGGTG
GTGGCAACCTCATTAATCCCGAATGGCTCGATGGCTCTCTCCCAGGTGAC
TACGGATTCGACCCACTTGGGCTTGGAAAGGACCCAGCATTCCTGAAATG
GTACAGAGAAGCAGAACTGATCCACGGACGATGGGCAATGGCTGCAGTTG
TTGGGATATTCGTCGGACAGGCGTGGAGTGGGATTCCATGGTTCGAGGCT
GGAGCAGATCCTGGAGCCATAGCACCCTTCTCCTTCGGCTCACTCCTGGG
AACCCAGCTTCTCCTTATGGGTTGGGTTGAGAGCAAGCGGTGGGTTGATT
TTTTCAATCCTGAATCTCAATCAGTTGAATGGGCAACACCTTGGTCAAGA
ACTGCTGAAAACTTTGCCAATGCGACTGGTGAACAAGGCTACCCTGGTGG
AAAGTTTTTTGATCCCTTATGTTTGGCTGGAACAATTAAGGATGGTGTCT
ACATTCCTGACACTGAGAAGCTTGACAGGCTCAAAGTTGCTGAGATTAAA
CATGCTAGGCTTGCTATGGTGGCCATGTTGATTTTCTACTTTGAAGCTGG
CCAAGGCAAGACGCCACTTTGGGGCTCTTGGTTTGTAAAACATGCTTATG
TAGATAACTCACTGATTGG
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