FC925054

Overview
NameFC925054
Unique NameFC925054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925054_ssr238 microsatellite FC925054_ssr238:238..247. BLAST: Citrus ESTs to Prunus persica proteins V1
FC925054_ssr63 microsatellite FC925054_ssr63:63..74. BLAST: Citrus ESTs to Prunus persica proteins V1
FC925054_ssr300 microsatellite FC925054_ssr300:300..314. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14595 contig Ccv1_Contig14595:1..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925054 vs. ExPASy Swiss-Prot
Match: PEX1_DICDI (Peroxisome biogenesis factor 1 OS=Dictyostelium discoideum GN=pex1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.037e-21
Identity = 55/171 (32.16%), Postives = 100/171 (58.48%), Query Frame = 2
Query:  161 NCFVSLPLKLIETL------ESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATSSSSF---IEVARQFAECIS-LADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAPKRR 643
            +CFVSLP K++ +L      +S     L  ++   +  ++   +  V W+G ++   F   IE++++ A+C+  + +   ++++ ++N+  A  V +EPLT DDWE++E++ ++ E  +LNQV I++     P+W+H +TII   V  T P  PVV+L   +E+ VAPK R
Sbjct:   12 DCFVSLPPKIVHSLLLLSEKQSKSLGTLGLEITWYDKINKKENKGYVGWAGGSTDPRFTDSIEMSQEMAQCLGGIKNEQKLKLKALNNIELAHSVQVEPLTSDDWEIMEVHQQYLEEQLLNQVNILYSGQIVPIWIHHKTIIKLKVTETLP-TPVVKLSSNSEIIVAPKPR 181          
BLAST of FC925054 vs. ExPASy Swiss-Prot
Match: PEX1_MOUSE (Peroxisome biogenesis factor 1 OS=Mus musculus GN=Pex1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 52/165 (31.52%), Postives = 85/165 (51.52%), Query Frame = 2
Query:  161 NCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQR---WVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAPKRRK 646
            +CF+ LP +L+  L      HLL Q  ++E+ S        WV        S +  E+ RQ  + + L+    V +R  S+V+    V +EPL+ DDWE+LEL++   E  +L+Q+RIV      P+W+  +T I   +V+  P  P  +L   T++ + PK R+
Sbjct:   26 DCFLHLPRRLVAQL------HLL-QNQAIEVASDHQPTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGDQVFLRPCSHVVSCQQVEVEPLSADDWEILELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAPYGRLETNTKLLIQPKTRQ 183          
BLAST of FC925054 vs. ExPASy Swiss-Prot
Match: PEX1_HUMAN (Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 52/178 (29.21%), Postives = 90/178 (50.56%), Query Frame = 2
Query:  161 NCFVSLPLKLIETLESTRSAHLLPQVLSLEL---RSRSNQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAPKRRK---NNVKKPEDSY 676
            +CF+ LP +L+  L      HLL Q  ++E+      +   WV     +    +  E+ RQ  + + L++   V ++  S+V+    V +EPL+ DDWE+LEL++   E  +L+Q+RIV     FP+W+  +T I   +V+  P     +L   T++ + PK R+   N   K +  Y
Sbjct:   26 DCFLHLPRRLVAQL------HLL-QNQAIEVVWSHQPAFLSWVEGRHFSDQGENVAEINRQVGQKLGLSNGGQVFLKPCSHVVSCQQVEVEPLSADDWEILELHAVSLEQHLLDQIRIVFPKAIFPVWVDQQTYIFIQIVALIPAASYGRLETDTKLLIQPKTRRAKENTFSKADAEY 196          
The following BLAST results are available for this feature:
BLAST of FC925054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PEX1_DICDI1.037e-2132.16Peroxisome biogenesis factor 1 OS=Dictyostelium di... [more]
PEX1_MOUSE4.220e-1531.52Peroxisome biogenesis factor 1 OS=Mus musculus GN=... [more]
PEX1_HUMAN3.572e-1429.21Peroxisome biogenesis factor 1 OS=Homo sapiens GN=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YB22FM1 TF Citrus clementina cDNA clone KN0AAP8YB22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925054 ID=FC925054; Name=FC925054; organism=Citrus clementina; type=EST; length=693bp
TTTCTTACAAAATCAACTCGGGAAAAGCGAAACCATCGGTAGGAGGGGGA
TTCCATCTACTACTTCTTCTTCTTCCGTCTTCCCTCCGAGTCGTGCGGAA
TTATTGGCGCGCGTGTAAGTGTAAATGGAGTTGGAGGTGAGAGTGGTGGG
TGGCGTAGAGAACTGCTTTGTATCACTTCCCCTTAAATTAATCGAGACTC
TTGAGTCCACGCGCTCCGCACATCTTCTCCCTCAAGTTCTCTCTCTCGAG
CTTCGCTCCCGCTCCAACCAACGCTGGGTCGTTGCTTGGTCCGGCGCTAC
TTCTTCTTCTTCTTTTATCGAGGTCGCTCGACAATTTGCAGAATGCATAT
CCTTGGCGGATCATACAATAGTTCAAGTGCGAGTAGTTTCCAATGTGCTG
AAGGCTACTTTAGTTACCATAGAACCTCTAACGGAGGATGATTGGGAAGT
TTTAGAGCTAAATTCAGAGCATGCTGAGGCTGCTATATTGAATCAGGTTA
GGATTGTCCACGAAGCGATGAGATTTCCTTTGTGGCTGCATGGCCGCACT
ATCATAACATTTCATGTGGTTTCAACTTTTCCCAAGAAACCGGTAGTGCA
ACTTGTACCGGGAACTGAAGTTGCTGTTGCTCCAAAGAGACGCAAGAACA
ATGTGAAGAAACCTGAAGATTCTTACATGGCAACTTTTAATGA
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