FC925062

Overview
NameFC925062
Unique NameFC925062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1936 contig Ccv1_Contig1936:103..497. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925062 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.002e-15
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  175 WLLVFAAELLLSFQWLLGIAYRWRPISRTVFPERLPEA---DQLPGIDVFICTADPSKEPTVEVMNTVLSTMALDY 393
            WL + AAEL   F W+L ++ RW P+ R  F +RL ++   D+LP +D+F+CTADP+ EP + V++TVLS MA DY
Sbjct:   68 WLGMLAAELWFGFYWVLTLSVRWCPVYRRTFKDRLAQSYSEDELPSVDIFVCTADPTAEPPMLVISTVLSVMAYDY 143          
BLAST of FC925062 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 40/97 (41.24%), Postives = 57/97 (58.76%), Query Frame = 1
Query:  109 LVYYRISYFFKVSDATAAPLLPWLLVFAAELLLSFQWLLGIAYRWRPISRTVFPERLPEA--DQLPGIDVFICTADPSKEPTVEVMNTVLSTMALDY 393
            ++YYR +      +  AA    WL + AAEL  +  W++  + RWRP  R  F +RL E     LPG+D+F+CTADP  EP   V++T+LS MA +Y
Sbjct:   42 VLYYRATRVPAAGEGRAA----WLGMAAAELWFAVYWVIAQSVRWRPFRRRTFRDRLAERYEQNLPGVDIFVCTADPQSEPPSLVISTILSVMAYNY 134          
BLAST of FC925062 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.376e-14
Identity = 40/97 (41.24%), Postives = 57/97 (58.76%), Query Frame = 1
Query:  109 LVYYRISYFFKVSDATAAPLLPWLLVFAAELLLSFQWLLGIAYRWRPISRTVFPERLPEA--DQLPGIDVFICTADPSKEPTVEVMNTVLSTMALDY 393
            ++YYR +      +  AA    WL + AAEL  +  W++  + RW P+ R  F  RL E   + LPG+DVF+CTADP  EP   V++T+LS MA +Y
Sbjct:   37 VLYYRATRVPAAGEGRAA----WLGMAAAELWFAVYWVITQSVRWCPVRRRTFKNRLAERYKENLPGVDVFVCTADPHAEPPSLVISTILSVMAYNY 129          
BLAST of FC925062 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 1
Query:   91 FTSLSFLVYYRISYFFKVSDA----TAAPLLPWLLVFAAELLLSFQWLLGIAYRWRPISRTVFPERLPE--ADQLPGIDVFICTADPSKEPTVEVMNTVLSTMALDY 393
            F S S  V   + +F+++ +     T    L W ++F  E+     W++  + RW P+ R  F +RL       LP +DVF+CTADP  EP + V+NTVLS  ALDY
Sbjct:   34 FFSASVFVCICLIWFYRIGEIGDNRTVLDRLIWFVMFIVEIWFGLYWVVTQSSRWNPVWRFPFSDRLSRRYGSDLPRLDVFVCTADPVIEPPLLVVNTVLSVTALDY 140          
BLAST of FC925062 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.653e-13
Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   88 HFTSLSFLVYYRISYFFKVSDATAAPLLPWLLVFAAELLLSFQWLLGIAYRWRPISRTVFPERLP-EADQLPGIDVFICTADPSKEPTVEVMNTVLSTMALDY 393
            H   +  L+Y+ +      S  TA   L   L+  ++++L+F W    + R++P+ RT +PE+   E +  P +DVFICTADP KEP + V+NT LS MA +Y
Sbjct:   52 HTCGIIALMYHHVH-----SLLTANTTLITSLLLLSDIVLAFMWATTTSLRYKPVRRTEYPEKYAAEPEDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEY 149          
BLAST of FC925062 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.037e-12
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  172 PWL-LVFAAELLLSFQWLLGIAYRWRPISRTVFPERLPEA-DQLPGIDVFICTADPSKEPTVEVMNTVLSTMALDY 393
            PW     A E   +F WLL +  +W P+    FPE L E  D+LP +D+F+ TADP  EP +  +NTVLS +ALDY
Sbjct:   48 PWRRAALACEAWFTFMWLLNVNAKWSPVRFDTFPENLAERIDELPAVDMFVTTADPVLEPPLVTVNTVLSLLALDY 123          
BLAST of FC925062 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  175 WLLVFAAELLLSFQWLLGIAYRWRPISRTVFPERLPE-ADQLPGIDVFICTADPSKEPTVEVMNTVLSTMALDY 393
            WL+ F  E   SF WLL    +W P     +P+RL E    LP +D+F+ TADP +EP + V+NTVLS +A++Y
Sbjct:   51 WLVAFLCESCFSFVWLLSTCTKWSPAETKPYPDRLDERVYDLPSVDMFVPTADPVREPPIMVVNTVLSLLAVNY 124          
BLAST of FC925062 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-12
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 1
Query:  175 WLLVFAAELLLSFQWLLGIAYRWRPISRTVFPERLPE-ADQLPGIDVFICTADPSKEPTVEVMNTVLSTMALDY 393
            W++ F  E   SF WLL  + +W P S   +PERL E    LP +D+F+ TADP +EP + V NT+LS +A++Y
Sbjct:   51 WVVAFLCESFFSFIWLLITSIKWSPASYKSYPERLDERVHDLPSVDMFVTTADPVREPPILVANTLLSLLAVNY 124          
BLAST of FC925062 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.309e-12
Identity = 39/106 (36.79%), Postives = 55/106 (51.89%), Query Frame = 1
Query:  127 SYFFKVSDATAAPLL----------------PWLLVFAAELLLSFQWLLGIAYRWRPISRTVFPERLPE-ADQLPGIDVFICTADPSKEPTVEVMNTVLSTMALDY 393
            SYF +  D T   LL                 W++ F  E   +F WLL    +W P     +PERL E   +LP +D+F+ TADP +EP + V+NTVLS +A++Y
Sbjct:   19 SYFLRAVDLTILGLLLSLLLYRILHVNQKDTVWIVAFLCETCFTFVWLLITNIKWSPADYKTYPERLDERVHELPPVDMFVTTADPVREPPLIVVNTVLSLLAVNY 124          
BLAST of FC925062 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.145e-12
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  175 WLLVFAAELLLSFQWLLGIAYRWRPISRTVFPERLPE-ADQLPGIDVFICTADPSKEPTVEVMNTVLSTMALDY 393
            WL+ F  E   SF WL+    +W P     +P RL E    LP +D+F+ TADP +EP + V+NTVLS +A++Y
Sbjct:   51 WLVAFLCESCFSFMWLIITCIKWSPAEDKPYPNRLDERVHDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNY 124          
The following BLAST results are available for this feature:
BLAST of FC925062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CSLE2_ORYSJ1.002e-1548.68Cellulose synthase-like protein E2 OS=Oryza sativa... [more]
CSLE1_ORYSJ1.447e-1441.24Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLE6_ORYSJ9.376e-1441.24Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CSLE1_ARATH2.728e-1337.38Cellulose synthase-like protein E1 OS=Arabidopsis ... [more]
CSLG3_ARATH4.653e-1337.86Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
CSLH1_ORYSJ1.037e-1246.05Cellulose synthase-like protein H1 OS=Oryza sativa... [more]
CSLB2_ARATH1.354e-1244.59Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]
CSLB3_ARATH1.768e-1244.59Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CSLB4_ARATH2.309e-1236.79Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLB6_ARATH5.145e-1243.24Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA19FM1 TF Citrus clementina cDNA clone KN0AAP3YA19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925062 ID=FC925062; Name=FC925062; organism=Citrus clementina; type=EST; length=394bp
TGGAGAAACAACCAAACTCTCTCCCACTTCACATTATCCGTGTTAAAAAA
TCCTCCTTAGTAATCAATATCGTCATTGGCACTGCTTCATTTTACATCCT
TATCTTTCTTGGTGTACTACAGAATCTCTTATTTCTTCAAAGTATCCGAC
GCCACAGCCGCGCCGCTGTTGCCATGGCTTCTAGTCTTTGCTGCCGAGCT
TCTCCTCTCCTTTCAGTGGCTCCTAGGCATAGCTTATCGCTGGCGTCCCA
TTTCTCGTACCGTTTTCCCCGAAAGGTTACCGGAAGCCGATCAACTTCCA
GGTATCGATGTGTTTATTTGCACTGCGGATCCGAGTAAAGAGCCAACTGT
GGAGGTAATGAATACCGTTTTGTCAACTATGGCGCTTGATTATC
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