FC925065

Overview
NameFC925065
Unique NameFC925065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1939 contig Ccv1_Contig1939:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925065 vs. ExPASy Swiss-Prot
Match: COBL7_ARATH (COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.841e-51
Identity = 94/134 (70.15%), Postives = 109/134 (81.34%), Query Frame = 1
Query:    1 SINLHLHTDYSRGWTARVTIFNWDETAFPDWFAAMQFDKAAPGFEAAYSFNGTVL--DGGNDTVFMQGLPGLNFLVGETDGANPEKDPRVPGKQQSVISFKKKDTPGINVPLGDGFPTKVFFNGEQCSLPSIYP 396
            SIN HL TDY  GWTARVT+FNW ET F DWF A+Q   AAPGFE AYSFN + +  +G N+T+FM+GLPGLN+LV E DG NP K+PR+PGKQQSV+SF KK TPGINVP GDGFP+KVFFNGE+CSLP+I P
Sbjct:  501 SINWHLATDYRGGWTARVTVFNWGETDFVDWFTAVQMKNAAPGFEKAYSFNASTIGINGKNNTIFMEGLPGLNYLVAERDGENPLKNPRIPGKQQSVMSFTKKLTPGINVPGGDGFPSKVFFNGEECSLPTILP 634          
BLAST of FC925065 vs. ExPASy Swiss-Prot
Match: COBL8_ARATH (COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.044e-48
Identity = 90/141 (63.83%), Postives = 109/141 (77.30%), Query Frame = 1
Query:    1 SINLHLHTDYSRGWTARVTIFNWDETAFPDWFAAMQFDKAAPGFEAAYSFNGTVL--DGGNDTVFMQGLPGLNFLVGETDGANPEKDPRVPGKQQSVISFKKKDTPGINVPLGDGFPTKVFFNGEQCSLPSIYPTSDGNTK 417
            SIN HL TDY  GWTARVT+FNW +T F DWF A++   AAPGF+ AYSFNG+++  +G N TV M+GLPGLN+L+ E DG NP +D R+PGKQQSVISF KK TPGI V   DGFPTKV FNG++CSLPS+ PTS+ + K
Sbjct:  493 SINWHLATDYRGGWTARVTLFNWGDTDFVDWFTAVELRNAAPGFQKAYSFNGSIIAVNGKNTTVLMEGLPGLNYLLAEKDGKNPSEDFRIPGKQQSVISFTKKLTPGIKVGSKDGFPTKVLFNGQECSLPSVLPTSNSHRK 633          
BLAST of FC925065 vs. ExPASy Swiss-Prot
Match: CBL10_ARATH (COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.497e-47
Identity = 82/132 (62.12%), Postives = 101/132 (76.52%), Query Frame = 1
Query:    1 SINLHLHTDYSRGWTARVTIFNWDETAFPDWFAAMQFDKAAPGFEAAYSFNGTVLDGGNDTVFMQGLPGLNFLVGETDGANPEKDPRVPGKQQSVISFKKKDTPGINVPLGDGFPTKVFFNGEQCSLPSIYP 396
            SIN H+ TDY  GWTAR+T+FNW + AF DWF A+   KA PG+E  YSFNGT +   N TV  QGLPG+N+LVG+ +G NP +DP VPGKQQSVISF KK+  G+N+P GDGFPTK+FFNGE+C+LP  +P
Sbjct:  512 SINWHVSTDYKNGWTARLTVFNWRDFAFEDWFVAIDMGKAGPGYENVYSFNGTRVPPSNRTVIFQGLPGMNYLVGQVNGTNPLRDPPVPGKQQSVISFTKKNIKGLNIPEGDGFPTKLFFNGEECALPKHFP 643          
BLAST of FC925065 vs. ExPASy Swiss-Prot
Match: CBL11_ARATH (COBRA-like protein 11 OS=Arabidopsis thaliana GN=COBL11 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.463e-42
Identity = 74/132 (56.06%), Postives = 97/132 (73.48%), Query Frame = 1
Query:    1 SINLHLHTDYSRGWTARVTIFNWDETAFPDWFAAMQFDKAAPGFEAAYSFNGTVLDGGNDTVFMQGLPGLNFLVGETDGANPEKDPRVPGKQQSVISFKKKDTPGINVPLGDGFPTKVFFNGEQCSLPSIYP 396
            S+N HL++DY  GW+ARVT+FNW   A  DWF A+   KA  G+E  YSFNG+ +   N T+F QGLPG+N+L+G T+G NP +DP++PGK QSVISFKKK+   +N+  GDGFP +VFFNGE+C LP  +P
Sbjct:  502 SLNWHLNSDYGNGWSARVTLFNWGNNAVEDWFGALDLGKAGLGYENIYSFNGSRVPPKNQTIFFQGLPGMNYLIGITNGTNPARDPQIPGKMQSVISFKKKNLGSLNIIGGDGFPKRVFFNGEECELPKYFP 633          
BLAST of FC925065 vs. ExPASy Swiss-Prot
Match: COBL9_ARATH (COBRA-like protein 9 OS=Arabidopsis thaliana GN=COBL9 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.049e-40
Identity = 84/144 (58.33%), Postives = 104/144 (72.22%), Query Frame = 1
Query:    1 SINLHLHTDYSRGWTARVTIFNWDETAFPDWFAAMQFDKAAP-GFEAAYSFNGTVL--DGG-NDTVFMQGLPGLNFLVGETDGANPEK-DPRVPGKQQSVISFKKKDTPGINVPLGDGFPTKVFFNGEQCSLPSIYPTSDGNTK 417
            SIN H+ +DY  GWT R+TIFNW E  FP+WF A+Q  K A  GFE AYSFN ++L  DGG N+T+FM+GLPGL++LV E D  +P+K + R+PGKQQSVI F KK TPGINV   DGFP KV FNGE+C LP + P + G  +
Sbjct:  499 SINWHMASDYRGGWTVRITIFNWGEIDFPNWFLAVQMKKPALLGFEKAYSFNASLLSVDGGVNNTIFMEGLPGLDYLVAEADEKDPKKKNIRIPGKQQSVIQFSKKLTPGINVAERDGFPAKVIFNGEECLLPDLLPMASGGRR 642          
The following BLAST results are available for this feature:
BLAST of FC925065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
COBL7_ARATH3.841e-5170.15COBRA-like protein 7 OS=Arabidopsis thaliana GN=CO... [more]
COBL8_ARATH3.044e-4863.83COBRA-like protein 8 OS=Arabidopsis thaliana GN=CO... [more]
CBL10_ARATH7.497e-4762.12COBRA-like protein 10 OS=Arabidopsis thaliana GN=C... [more]
CBL11_ARATH1.463e-4256.06COBRA-like protein 11 OS=Arabidopsis thaliana GN=C... [more]
COBL9_ARATH1.049e-4058.33COBRA-like protein 9 OS=Arabidopsis thaliana GN=CO... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YA22FM1 TF Citrus clementina cDNA clone KN0AAP3YA22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925065 ID=FC925065; Name=FC925065; organism=Citrus clementina; type=EST; length=708bp
AGTATCAACTTGCATTTACATACAGACTATAGTCGTGGATGGACTGCAAG
AGTGACAATCTTCAACTGGGATGAAACTGCTTTTCCTGATTGGTTTGCTG
CGATGCAGTTTGACAAAGCAGCTCCGGGTTTTGAAGCAGCATACTCATTC
AATGGAACTGTTTTGGATGGTGGCAATGATACTGTATTCATGCAGGGTCT
TCCGGGATTGAACTTTCTTGTGGGTGAGACAGATGGAGCCAATCCTGAGA
AGGATCCTAGAGTGCCTGGGAAACAACAGTCAGTGATCTCGTTTAAAAAG
AAAGATACCCCTGGAATTAATGTGCCTCTTGGAGATGGGTTTCCTACTAA
AGTATTCTTTAACGGGGAGCAGTGCTCGCTTCCTTCAATATATCCTACAA
GTGATGGTAATACAAAGAGCTCAGCTCTACTCTTTTCGATCCTTGCAGCT
GCATTTGTGTTATTGTTGATACAGCAGCAATAGTCATTGGGCAAGGCAGT
GCTCGCTGATTTTTTTATTCTTTCAGTAGTTTTATTAAATACTTGTGAGG
ATTGACATTACCAGATGAGGTGTACACTATGATTCATATATACAGTATGT
TACATTTCATTATGTTAGCCATGCAGTTGATTCACATGATAGAAATTGTG
GAACATTATATAAACAGCTATAGAATTTCGTGATTTGTACAAAAAAAAAA
AAAAAAAA
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