FC925066

Overview
NameFC925066
Unique NameFC925066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3375 contig Ccv1_Contig3375:200..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.930e-31
Identity = 88/225 (39.11%), Postives = 104/225 (46.22%), Query Frame = 3
Query:  126 MCGGSILGDFFPRHGGSRVTASDLWPN----------------------SPFAATKQLPHNFESTPFSDEHQS---LAKIKR---PQPPSYLNSCSASGD-------------EKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPXXXXXXXXXXXXXXNPTPSPLPSLSQEDLFSRNN 677
            MCGG+I+ DF P     RVT+  +WP+                      + F A  Q   +  S    D+       A +K       P    S +A G              EK   R+RKN YRGIRQRPWGKWAAEIRDPR+G R+WLGTF TAEEAARAYD  AR+IRG KAKVNFP E                       P P+P P+L Q    S  N
Sbjct:    1 MCGGAIISDFIPPPRSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGDVFADVKPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEEN--MKANSQKRSVKANLQKPVAKPNPNPSPALVQNSNISFEN 223          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30
Identity = 71/147 (48.30%), Postives = 93/147 (63.27%), Query Frame = 3
Query:  126 MCGGSILGDFFP---RHGGSRVTASDLWPNSPFAATKQLPHNFESTPFSDEHQSLAK---IKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            MCGG+I+ D+ P   +  G ++TA +LW     +A       + ++     +Q   K   +K+ Q             E   +R+RKN+YRGIR+RPWGKWAAEIRDPRKGVRVWLGTFNTAEEAA AYD  A++IRG KAK+NFP+
Sbjct:    1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAADDFWGFYSTSKLHPTNQVNVKEEAVKKEQ-----------ATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPD 136          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30
Identity = 83/193 (43.01%), Postives = 104/193 (53.89%), Query Frame = 3
Query:  126 MCGGSILGDFFPRHGGSRVTASDLWP---NSPFAATKQ---------LPHNFEST----------PFSDEHQSLAKIK--------RPQPPSYLNSC--------------SASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVT 572
            MCGG+I+ DF P     RVT   +WP   N   A+ K+         L  +FE+              D+      +K        +P   +++++               SA   EK  KR+RKN YRGIRQRPWGKWAAEIRDPRKG R WLGTF+TAEEAARAYD  AR+IRG KAKVNFP E++   V+
Sbjct:    1 MCGGAIISDFIPPPRSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQGFKDDSAFDCEDDDDVFVNVKPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVS 193          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.907e-29
Identity = 73/143 (51.05%), Postives = 88/143 (61.54%), Query Frame = 3
Query:  126 MCGGSILGDFFPRHGGSRVTASDLWPNSPFAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEE 554
            MCGG+I+ DF             +W  S            ES P   +  S++  K+ +P S         +E+  KR+RKNLYRGIRQRPWGKWAAEIRDP KGVRVWLGTF TA+EAARAYD  A KIRG+KAK+NFPN +
Sbjct:    1 MCGGAIISDF-------------IWSKS------------ESEP--SQLGSVSSRKKRKPVSV-------SEERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPNTQ 109          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.491e-29
Identity = 64/92 (69.57%), Postives = 73/92 (79.35%), Query Frame = 3
Query:  282 AKIKRPQPPSYLNSCSASGDE----KKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            A  KR      L++ + +G +    K  KR+RKN +RGIRQRPWGKWAAEIRDPRKGVRVWLGTFN+AEEAARAYD EAR+IRGKKAKVNFP
Sbjct:   85 AAFKRALSRDNLSTITTAGFDGPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP 176          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.671e-25
Identity = 52/72 (72.22%), Postives = 62/72 (86.11%), Query Frame = 3
Query:  336 GDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 551
            G     K+++ + Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNTAEEAARAYD EA++IRG KAK+NFPNE
Sbjct:   12 GSASDGKKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNE 83          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.943e-23
Identity = 53/101 (52.48%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  339 DEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPXXXXXXXXXXXXXXNPTPSPLP 641
            D+ +P+R+    YRG+RQRPWGKWAAEIRDP+K  RVWLGTF TAEEAA AYD+ A K +G KAK+NFP      T T               +P P P P
Sbjct:   30 DQDQPRRRH---YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQGPTTTTTISHAPRGVSESMNSPPPRPGP 127          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.014e-22
Identity = 52/95 (54.74%), Postives = 66/95 (69.47%), Query Frame = 3
Query:  261 SDEHQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            SD    ++++     PS ++  S+S   ++    R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF+TAEEAA AYDK A + RG KAK+NFP
Sbjct:   32 SDVSDFVSELTGQPIPSSIDDQSSSLTLQEKSNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.324e-22
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:  276 SLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTP 575
            S A++     P   +   A  +E + K++R   YRG+RQRPWGKWAAEIRDP +  RVWLGTF+TAE AARAYD+ A + RG KAK+NFP  EDV  + P
Sbjct:   47 SFARVDSSHNPIEESMSKAFPEEAREKKRR---YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP--EDVRILPP 141          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.031e-22
Identity = 52/95 (54.74%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  297 PQP----PSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTV 569
            PQP     +    C +S   ++PK+     YRG+RQRPWGKWAAEIRDP K  RVWLGTF TAE AARAYD  A + RG KAK+NFP      T+
Sbjct:   36 PQPLITGSAVTKECESSMSLERPKK-----YRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVGTQTI 125          
The following BLAST results are available for this feature:
BLAST of FC925066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
RA212_ARATH5.930e-3139.11Ethylene-responsive transcription factor RAP2-12 O... [more]
RAP23_ARATH1.011e-3048.30Ethylene-responsive transcription factor RAP2-3 OS... [more]
RAP22_ARATH1.011e-3043.01Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF71_ARATH1.907e-2951.05Ethylene-responsive transcription factor ERF071 OS... [more]
ERF1_ORYSJ2.491e-2969.57Ethylene-responsive transcription factor 1 OS=Oryz... [more]
ERF73_ARATH1.671e-2572.22Ethylene-responsive transcription factor ERF073 OS... [more]
EF113_ARATH5.943e-2352.48Ethylene-responsive transcription factor ERF113 OS... [more]
EF112_ARATH1.014e-2254.74Ethylene-responsive transcription factor ERF112 OS... [more]
EF110_ARATH1.324e-2254.00Ethylene-responsive transcription factor ERF110 OS... [more]
RAP26_ARATH5.031e-2254.74Ethylene-responsive transcription factor RAP2-6 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA24FM1 TF Citrus clementina cDNA clone KN0AAP3YA24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925066 ID=FC925066; Name=FC925066; organism=Citrus clementina; type=EST; length=726bp
TTAATTCGTAAATCCCTTTGAGTTCTCTCGCATCTTCTTTTCTCTTAATA
ATCGCCAAAACCACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTT
ATTATTACATTTACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAG
ACTTCTTTCCTCGCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGG
CCCAACTCACCCTTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATC
TACTCCGTTCTCCGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTC
AACCCCCTTCATATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAG
CCCAAGAGGCAGAGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTG
GGGCAAATGGGCAGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCT
GGCTCGGCACATTCAACACTGCCGAAGAAGCAGCTCGAGCCTATGACAAA
GAAGCCCGCAAGATTCGCGGCAAGAAAGCCAAAGTCAACTTCCCCAACGA
AGAGGACGTCTTCACCGTCACCCCTGCTGCTGCCGCCCATGCTTACCATC
ATCATCAGCATAATCATAATCCCACTCCCAGTCCCCTTCCTTCTCTTTCC
CAAGAAGATCTTTTTAGTCGTAATAACTCATCTATAAGTAGTGTTGGTTT
TGACTTGTATGGGTATGATCTGAACC
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