FC925069

Overview
NameFC925069
Unique NameFC925069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11753 contig Ccv1_Contig11753:155..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: RH56_ARATH (DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2)

HSP 1 Score: 408.683 bits (1049), Expect = 1.378e-113
Identity = 202/220 (91.82%), Postives = 209/220 (95.00%), Query Frame = 2
Query:    2 ELLDYEEEDAQAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            ELLDYEEED + PDS   K NGEA KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ EP+PGQV+ALVLCHTRELAYQIC+EF RFSTYLPD KV+VFYGGVNIKIHKDLLKNECP IVVGTPGR+LALAR+KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT
Sbjct:   13 ELLDYEEEDEKVPDS-GNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: RH15_ARATH (DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana GN=RH15 PE=2 SV=2)

HSP 1 Score: 408.683 bits (1049), Expect = 1.378e-113
Identity = 202/220 (91.82%), Postives = 209/220 (95.00%), Query Frame = 2
Query:    2 ELLDYEEEDAQAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            ELLDYEEED + PDS   K NGEA KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ EP+PGQV+ALVLCHTRELAYQIC+EF RFSTYLPD KV+VFYGGVNIKIHKDLLKNECP IVVGTPGR+LALAR+KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT
Sbjct:   13 ELLDYEEEDEKVPDS-GNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: RH56_ORYSJ (DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp. japonica GN=Os01g0549700 PE=2 SV=2)

HSP 1 Score: 377.867 bits (969), Expect = 2.605e-104
Identity = 189/222 (85.14%), Postives = 199/222 (89.64%), Query Frame = 2
Query:    2 ELLDYEEEDAQAPDSVATKANGEA--AKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            +L+DYEEE     D  A  AN  A   KKGYVGIHSSGFRDFLLKPELLRAI D GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLS+LQQ +P  GQV ALVLCHTRELAYQICHEFERFS YLP++KVAVFYGGV+IK HKDLLKN+CP IVVGTPGRILALAR+KDLSLKNVRHFILDECDKML+SLDMRRDVQEIFKMTPHDKQVMMFSAT
Sbjct:   15 DLVDYEEEVENGTDGGANAANASADVVKKGYVGIHSSGFRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSAT 236          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: RH15_ORYSJ (DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sativa subsp. japonica GN=Os01g0550000 PE=2 SV=1)

HSP 1 Score: 377.867 bits (969), Expect = 2.605e-104
Identity = 189/222 (85.14%), Postives = 199/222 (89.64%), Query Frame = 2
Query:    2 ELLDYEEEDAQAPDSVATKANGEA--AKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            +L+DYEEE     D  A  AN  A   KKGYVGIHSSGFRDFLLKPELLRAI D GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLS+LQQ +P  GQV ALVLCHTRELAYQICHEFERFS YLP++KVAVFYGGV+IK HKDLLKN+CP IVVGTPGRILALAR+KDLSLKNVRHFILDECDKML+SLDMRRDVQEIFKMTPHDKQVMMFSAT
Sbjct:   15 DLVDYEEEVENGADGGAAAANASADVVKKGYVGIHSSGFRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSAT 236          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: UAP56_RAT (Spliceosome RNA helicase Bat1 OS=Rattus norvegicus GN=Bat1 PE=2 SV=3)

HSP 1 Score: 333.569 bits (854), Expect = 5.634e-91
Identity = 165/222 (74.32%), Postives = 194/222 (87.39%), Query Frame = 2
Query:    2 ELLDYEEEDAQ-APDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            ELLDYE+++ + A  +  T+A  +   KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP  GQV+ LV+CHTRELA+QI  E+ERFS Y+P++KVAVF+GG++IK  +++LK  CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSAT
Sbjct:    9 ELLDYEDDEVETAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 230          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: UAP56_MOUSE (Spliceosome RNA helicase Bat1 OS=Mus musculus GN=Bat1 PE=1 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 5.634e-91
Identity = 165/222 (74.32%), Postives = 194/222 (87.39%), Query Frame = 2
Query:    2 ELLDYEEEDAQ-APDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            ELLDYE+++ + A  +  T+A  +   KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP  GQV+ LV+CHTRELA+QI  E+ERFS Y+P++KVAVF+GG++IK  +++LK  CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSAT
Sbjct:    9 ELLDYEDDEVETAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 230          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: UAP56_PONAB (Spliceosome RNA helicase BAT1 OS=Pongo abelii GN=BAT1 PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 7.359e-91
Identity = 167/228 (73.25%), Postives = 191/228 (83.77%), Query Frame = 2
Query:    2 ELLDYEEEDAQAPDSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            ELLDYE+      D V T A G+ A        K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP  GQV+ LV+CHTRELA+QI  E+ERFS Y+P++KVAVF+GG++IK  +++LK  CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSAT
Sbjct:    9 ELLDYED------DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 230          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: UAP56_PIG (Spliceosome RNA helicase BAT1 OS=Sus scrofa GN=BAT1 PE=3 SV=2)

HSP 1 Score: 333.183 bits (853), Expect = 7.359e-91
Identity = 167/228 (73.25%), Postives = 191/228 (83.77%), Query Frame = 2
Query:    2 ELLDYEEEDAQAPDSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            ELLDYE+      D V T A G+ A        K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP  GQV+ LV+CHTRELA+QI  E+ERFS Y+P++KVAVF+GG++IK  +++LK  CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSAT
Sbjct:    9 ELLDYED------DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 230          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: UAP56_PANTR (Spliceosome RNA helicase BAT1 OS=Pan troglodytes GN=BAT1 PE=3 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 7.359e-91
Identity = 167/228 (73.25%), Postives = 191/228 (83.77%), Query Frame = 2
Query:    2 ELLDYEEEDAQAPDSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            ELLDYE+      D V T A G+ A        K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP  GQV+ LV+CHTRELA+QI  E+ERFS Y+P++KVAVF+GG++IK  +++LK  CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSAT
Sbjct:    9 ELLDYED------DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 230          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: UAP56_MACMU (Spliceosome RNA helicase BAT1 OS=Macaca mulatta GN=BAT1 PE=3 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 7.359e-91
Identity = 167/228 (73.25%), Postives = 191/228 (83.77%), Query Frame = 2
Query:    2 ELLDYEEEDAQAPDSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            ELLDYE+      D V T A G+ A        K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP  GQV+ LV+CHTRELA+QI  E+ERFS Y+P++KVAVF+GG++IK  +++LK  CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSAT
Sbjct:    9 ELLDYED------DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 230          
The following BLAST results are available for this feature:
BLAST of FC925069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH56_ARATH1.378e-11391.82DEAD-box ATP-dependent RNA helicase 56 OS=Arabidop... [more]
RH15_ARATH1.378e-11391.82DEAD-box ATP-dependent RNA helicase 15 OS=Arabidop... [more]
RH56_ORYSJ2.605e-10485.14DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sa... [more]
RH15_ORYSJ2.605e-10485.14DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sa... [more]
UAP56_RAT5.634e-9174.32Spliceosome RNA helicase Bat1 OS=Rattus norvegicus... [more]
UAP56_MOUSE5.634e-9174.32Spliceosome RNA helicase Bat1 OS=Mus musculus GN=B... [more]
UAP56_PONAB7.359e-9173.25Spliceosome RNA helicase BAT1 OS=Pongo abelii GN=B... [more]
UAP56_PIG7.359e-9173.25Spliceosome RNA helicase BAT1 OS=Sus scrofa GN=BAT... [more]
UAP56_PANTR7.359e-9173.25Spliceosome RNA helicase BAT1 OS=Pan troglodytes G... [more]
UAP56_MACMU7.359e-9173.25Spliceosome RNA helicase BAT1 OS=Macaca mulatta GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YP03FM1 TF Citrus clementina cDNA clone KN0AAP1YP03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925069 ID=FC925069; Name=FC925069; organism=Citrus clementina; type=EST; length=661bp
TGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTCCGTCG
CTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACAC
AGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAAT
TGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATGCATAC
CTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATG
GGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCCAAA
TCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTT
ATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATC
AAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAAGATTT
GCTGAAAAACGAATGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATAC
TAGCTCTTGCTAGAGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTT
ATCCTTGATGAATGCGATAAGATGCTGGAATCTCTTGACATGAGAAGAGA
TGTGCAAGAGATTTTCAAGATGACTCCTCATGACAAGCAAGTAATGATGT
TTTCAGCAACA
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