FC925075

Overview
NameFC925075
Unique NameFC925075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10250 contig Ccv1_Contig10250:24..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXLA2_ARATH (Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.226e-89
Identity = 150/221 (67.87%), Postives = 188/221 (85.07%), Query Frame = 2
Query:   56 SSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQ--GKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            SSA ACDRC+H +K AYFS ASALSSGAC YGS+A  F  GH+AA +PS+YKDG+GCGACFQ+RCKNPTLCS KGT VI+TDLN +NQTD V+SSRAF A++    G  +D+LK G+VD+EY+RVPC+Y N+ + VRVEESS+ PNYLA+K+LYQGGQTE+VA+ +AQVGSS+W YM+R++GAVW T +VPNGALQFRFVVT+ YDGK +W++ VLPA+W+
Sbjct:   17 SSAAACDRCLHSSKAAYFSSASALSSGACAYGSMATGFFAGHIAAALPSIYKDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNKTNQTDLVLSSRAFRAMAKPVVGADRDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGSSHWSYMTRSHGAVWVTDKVPNGALQFRFVVTAGYDGKMVWSQRVLPANWE 237          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXLA1_ARATH (Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 6.086e-89
Identity = 150/222 (67.57%), Postives = 190/222 (85.59%), Query Frame = 2
Query:   56 SSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQ--GKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSS-NWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            SS  ACDRC+H++K AYFS ASALSSGAC YGS+A SF  GH+AA +PS+YKDGAGCGACFQ+RCKNP LCS KGT V++TDLN SNQTD V+SSRAF A++    G  +D+LK G+VD+EY+RVPC+Y N+N+ VRVEE+S+KPNYL +K+LYQGGQTE+V++D+AQVGSS NWGYM+R++GAVW T +VP GA+QFRFVVT  YDGK IW+++VLP++W+
Sbjct:   16 SSVNACDRCLHRSKAAYFSSASALSSGACAYGSMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNKSNQTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSHGAVWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWE 237          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXLA3_ARATH (Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.165e-86
Identity = 147/220 (66.82%), Postives = 180/220 (81.82%), Query Frame = 2
Query:   56 SSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQD--ILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADW 709
            SS  ACDRC+H++K +YFS ASALSSGAC YG +A SF  GH+AA +PS+YKDGAGCGACFQ+RCKNP LC+ KGT V++TDLN SNQTD V+SSRAF A++    G D  +LK G+VDVEY+RVPC Y  +NL VRVEE+S+KPNYLA+K+LYQGGQTE+V +D+A VGSS W YMSR++GAVW T +VP GALQF+F VT  YDGK +W+K VLPA+W
Sbjct:   16 SSVNACDRCLHRSKASYFSSASALSSGACAYGPMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLNTSNQTDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHGAVWATDKVPTGALQFKFTVTGGYDGKTVWSKRVLPANW 235          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXLA3_ORYSJ (Expansin-like A3 OS=Oryza sativa subsp. japonica GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.035e-68
Identity = 120/224 (53.57%), Postives = 157/224 (70.09%), Query Frame = 2
Query:   62 ATACDRCVHQTKVAYFSQASAL---SSGACGYGSLALSF--NGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWA-KNVLPADWKP 715
            A+AC+RCV   K AY    S L     G CGYG++A+    NGG LAAG P  ++ G GCG CFQMRC+N  +CS  G RV+LTD + SN TDF++   AF  L+  G    + KL  + VEY+R+PC+YK++NL++ VEE S++PN L +K LYQGGQT+++A+DVAQVGSS+W +M+R YG VW   R PNG LQFR VVT  YDGKW+WA + VLPA+W+P
Sbjct:   26 ASACERCVRNGKAAYSPSLSPLPPGGGGGCGYGAMAMEMELNGGFLAAGGPRQHRGGLGCGRCFQMRCRNAEVCSNAGVRVVLTDFHRSNSTDFLLGGPAFAGLAKPGMAHKLKKLDALSVEYRRIPCDYKDKNLSILVEEQSKRPNNLVIKFLYQGGQTDILAVDVAQVGSSDWRFMTRVYGPVWSIDRAPNGPLQFRAVVTGGYDGKWVWADREVLPANWQP 249          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXLA2_ORYSJ (Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.839e-67
Identity = 120/221 (54.30%), Postives = 159/221 (71.95%), Query Frame = 2
Query:   56 SSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYK-NQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAK-NVLPADW 709
            S  + CDRCV ++K  +   + AL++G+CGYGSLA SFNGGHLAA  P+L++ G GCGACFQ+RCK+  LCS  G +V++TD   S N+TD V+S+ A+ A++  G    +     VDVEYKRVPCEY   +NL++RVEE S+ P  L+++ LYQGGQT++VA+DVA VGSSNW +M+R+YG  W T++ P G LQFR VVT  YDGKW+WA   VLP  W
Sbjct:   26 SMVSGCDRCVRRSKAGFRDSSIALNAGSCGYGSLAASFNGGHLAAASPALFRGGVGCGACFQVRCKDGKLCSTAGAKVVVTDEARSTNRTDLVLSAAAYAAMARPGMAAQLRTRRAVDVEYKRVPCEYAAGRNLSIRVEEKSRPPRELSIRFLYQGGQTDIVAVDVATVGSSNWKFMTRDYGPAWSTAQAPAGPLQFRVVVTGGYDGKWVWADGEVLPRRW 246          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXLA1_ORYSJ (Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.548e-67
Identity = 115/219 (52.51%), Postives = 160/219 (73.06%), Query Frame = 2
Query:   62 ATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGG-HLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWA-KNVLPADWK 712
            A+ CDRCV +++ AY++ +  L++G+CGYG+ A +FNGG  LAA  P+LY+ G GCGAC+Q+RCK+  LCS  G RV++TD   +N+T  V+SS AF A++  G    + +L  VDVEYKRVPCEY++++L+VRV+E S+ PN L +  LYQGGQT++VA+DVAQVGSS+W +M+R +G  W  +  P G LQ R VVT  YDGKW+WA + VLP  W+
Sbjct:   33 ASGCDRCVRRSRAAYYTSSLTLTAGSCGYGTAAATFNGGGFLAAAGPALYRGGVGCGACYQVRCKDKKLCSNAGARVVVTDRARTNRTGLVLSSPAFAAMARPGMAASLTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGSSSWKFMTREHGPSWSMANAPPGPLQMRLVVTGGYDGKWVWADREVLPRRWR 251          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXLA4_ORYSJ (Expansin-like A4 OS=Oryza sativa subsp. japonica GN=EXLA4 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.060e-41
Identity = 93/249 (37.35%), Postives = 148/249 (59.44%), Query Frame = 2
Query:   56 SSATACDRCVHQTKVAYF----SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDL-------NHSNQT-----DFVISSRAFMALSNQG-KGQDILKLGVVDVEYKRVPCEYK-NQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGS--------SNWGYMSRNYGA--VWDTSRVPNGALQFRFVVTSXYDGKWIWAK-NVLPADWKP 715
            ++A +CD C  +          + A+ L+ GACG+G+  +  N   +AA    L++ G  CGAC+Q+RC++  LC   G +V++ D+          N+T      F I+  AF A++ QG    ++ +   ++V+++R+PCEY+ ++ LAVRVEE+S+ P +LA++ LYQGGQT++ A+++AQ  +        S+W YM+R  GA  VW TSR P G L+ R VVT+   GKW+ +   VLPADW+P
Sbjct:   30 AAAHSCDWCTPRHSTVSILPTPTHAAHLTGGACGFGAAPMELN---VAAVTADLFRHGHACGACYQLRCRDRRLCGEDGVKVVVADMAKQPEQEGEMNRTAGGSLQFRITEDAFAAMAKQGVSAHELTRQRTLEVDFRRIPCEYRESRRLAVRVEEASRNPTHLAIRFLYQGGQTDIAAVEIAQANATPPSSSYYSSWRYMTRRDGAPGVWTTSRAPVGPLRLRVVVTAGSGGKWLRSDGEVLPADWRP 275          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.375e-40
Identity = 77/192 (40.10%), Postives = 109/192 (56.77%), Query Frame = 2
Query:  134 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADW 709
            G CGYG      N G ++     L+ +G GCGAC+Q+RCK P  CS +G  V+ TD    + TDF++S +A+  ++  G    +   GVV+VEY+R+PC Y   NL  ++ E S  P+YLA+ VLY GG  +++A++V Q     W  M R +GAV D    P G L  RF+V       WI + N +PADW
Sbjct:   46 GHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPHCSEEGVYVVATDSGEGDGTDFILSPKAYGRMARPGTENQLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAVHDLQNPPRGTLTLRFLVYGSAGINWIQSPNAIPADW 237          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXLB1_ORYSJ (Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.423e-39
Identity = 83/224 (37.05%), Postives = 127/224 (56.70%), Query Frame = 2
Query:   56 SSATACDRCVHQTKVAYF--SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQ-GKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXY---DGKWIWAKNVLPADW 709
            S ATA D     ++ AY+  S      +GAC YG+   + N G ++A   SLY+DG GCGAC+Q+RC NP  CS  G  +++TD   S+ TDF++S  AF  ++     G  +L LGVV +EY+RV C Y N+N+  ++ ESS  PNYL  ++ YQ G  +++A+ + +  +     +SR +GAVW     P+G L  R + +S        W+   N++P +W
Sbjct:   20 SKATA-DANFTVSRAAYYPNSDIKGTENGACEYGAFGATLNNGDVSASA-SLYRDGVGCGACYQVRCTNPYYCSPNGVTIVITDSGASDGTDFILSQHAFTRMAQSTDAGTALLTLGVVGIEYRRVSCTYPNKNIVFKITESSNFPNYLEFEIWYQQGNQDIIAVQLCETVNLTCQLLSRTHGAVWAAVSPPSGPLSIRMLFSSGAPRGGDTWLVPTNIVPQNW 241          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXB10_ORYSJ (Expansin-B10 OS=Oryza sativa subsp. japonica GN=EXPB10 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.360e-30
Identity = 67/199 (33.67%), Postives = 112/199 (56.28%), Query Frame = 2
Query:  128 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQT--DFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            + GACGY  +  +   G  + G   ++KDG GCG+CF+++C  P  CS K   + +TD+N        F +S  AF A++ +GK +++ K G++D++++RV C+Y  +       E    PNY AV V Y GG  ++V +++ + GS  W  ++ ++GA+W  DT +   G    R  VT+  D K + A +V+P +WK
Sbjct:   60 NGGACGYKDIDKAPFLGMNSCGNDPIFKDGKGCGSCFEVKCSKPEACSDKPVIIHITDMNTEPIAAYHFDLSGHAFGAMAKEGKDEELRKAGIIDMQFRRVRCKYPGETKVTFHVEKGSNPNYFAVLVKYVGGDGDVVKVELKEKGSEEWKPLNESWGAIWRIDTPKPLKGPFSLR--VTTESDQKLV-ANDVIPDNWK 255          
The following BLAST results are available for this feature:
BLAST of FC925075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
EXLA2_ARATH1.226e-8967.87Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 ... [more]
EXLA1_ARATH6.086e-8967.57Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 ... [more]
EXLA3_ARATH2.165e-8666.82Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 ... [more]
EXLA3_ORYSJ2.035e-6853.57Expansin-like A3 OS=Oryza sativa subsp. japonica G... [more]
EXLA2_ORYSJ3.839e-6754.30Expansin-like A2 OS=Oryza sativa subsp. japonica G... [more]
EXLA1_ORYSJ6.548e-6752.51Expansin-like A1 OS=Oryza sativa subsp. japonica G... [more]
EXLA4_ORYSJ8.060e-4137.35Expansin-like A4 OS=Oryza sativa subsp. japonica G... [more]
EXLB1_ARATH1.375e-4040.10Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 ... [more]
EXLB1_ORYSJ4.423e-3937.05Expansin-like B1 OS=Oryza sativa subsp. japonica G... [more]
EXB10_ORYSJ8.360e-3033.67Expansin-B10 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YP15FM1 TF Citrus clementina cDNA clone KN0AAP1YP15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925075 ID=FC925075; Name=FC925075; organism=Citrus clementina; type=EST; length=716bp
CTATCTTTCTCATTAAACAATGGTTTTGTTTCTTTGCTTTCTCTTCTTTC
TCTTCTCTTCTGCTACTGCTTGTGATCGCTGTGTGCACCAAACCAAGGTT
GCTTATTTCTCCCAAGCCTCTGCACTTTCATCCGGGGCATGTGGATATGG
TTCATTAGCATTAAGCTTCAATGGTGGACACCTTGCTGCTGGTGTTCCTT
CCCTTTACAAAGATGGAGCTGGTTGTGGTGCATGCTTTCAAATGAGATGC
AAGAACCCAACTCTGTGTAGCGGCAAAGGAACCAGAGTGATTCTGACTGA
TCTCAATCACAGCAACCAAACAGATTTTGTTATCAGCAGCAGAGCTTTCA
TGGCCTTATCCAACCAGGGCAAGGGCCAAGACATTTTAAAACTTGGAGTT
GTCGATGTAGAATACAAAAGGGTTCCATGTGAATATAAAAACCAGAACTT
GGCTGTGCGTGTGGAAGAATCAAGTCAAAAACCAAATTATTTAGCAGTTA
AAGTGTTGTATCAGGGTGGTCAAACAGAAATGGTAGCAATGGATGTAGCT
CAGGTTGGTTCTTCAAACTGGGGTTACATGAGCAGAAATTATGGGGCAGT
TTGGGATACAAGTAGAGTGCCAAATGGGGCATTGCAGTTCAGATTTGTGG
TAACATCANGCTATGATGGCAAGTGGATTTGGGCAAAAAATGTTCTTCCA
GCTGATTGGAAACCTG
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