FC925078

Overview
NameFC925078
Unique NameFC925078
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1817 contig Ccv1_Contig1817:3..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925078 vs. ExPASy Swiss-Prot
Match: YBA9_SCHPO (Uncharacterized protein C119.09c OS=Schizosaccharomyces pombe GN=SPBC119.09c PE=2 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.940e-27
Identity = 55/139 (39.57%), Postives = 85/139 (61.15%), Query Frame = 1
Query:  163 NRNTEWFTYPGVWTTYILILFFAWLIVLSVFGCSPGMAWTIVNLAHFLITYHFFHWKKGTPFAEDQGIYNGLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFFNTLAVFVLVVAKFPNMHKVRIFGI 579
            N N+ W  Y G W  +I+++    LI  ++   S  +AWT+ NL +   ++  FHW  GTPF  + G Y+ LT WEQ+D G Q T  RK+L V+P++L+L+++H T Y   M   N  A+F++++ K P +H+ RIFGI
Sbjct:   33 NYNSNWVNYKGAWVIHIVLIAALRLIFHAIPSVSRELAWTLTNLTYMAGSFIMFHWVTGTPFEFNGGAYDRLTMWEQLDEGNQYTPARKYLLVLPIILFLMSTHYTHYNGWMFLVNIWALFMVLIPKLPAVHRKRIFGI 171          
BLAST of FC925078 vs. ExPASy Swiss-Prot
Match: ORML3_MOUSE (ORM1-like protein 3 OS=Mus musculus GN=Ormdl3 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.322e-27
Identity = 61/147 (41.50%), Postives = 86/147 (58.50%), Query Frame = 1
Query:  145 TPPADLNRNTEWFTYPGVWTTYILILFFAWLIVLSVFGCSPGMAWTIVNLAHFLITYHFFHWKKGTPF-AEDQGIYNGLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFFNTLAVFVLVVAKFPNMHKVRIFGIN 582
            T  +++N NT      G+W +Y+L +    +++LS+   S  + WT+ NL H L  Y F H  KGTPF   DQG    LT WEQ+D G Q T +RKFLT+ P+VLY + S  T Y       NT+++  +++ K P +H VRIFGIN
Sbjct:    5 TAHSEVNPNTRVMNSRGIWLSYVLAIGLLHVVLLSIPFVSVPVVWTLTNLIHNLGMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYDQVHFILNTVSLMTVLIPKLPQLHGVRIFGIN 151          
BLAST of FC925078 vs. ExPASy Swiss-Prot
Match: ORML3_RAT (ORM1-like protein 3 OS=Rattus norvegicus GN=Ormdl3 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 7.372e-27
Identity = 61/147 (41.50%), Postives = 86/147 (58.50%), Query Frame = 1
Query:  145 TPPADLNRNTEWFTYPGVWTTYILILFFAWLIVLSVFGCSPGMAWTIVNLAHFLITYHFFHWKKGTPF-AEDQGIYNGLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFFNTLAVFVLVVAKFPNMHKVRIFGIN 582
            T  +++N NT      G+W +Y+L +    +++LS+   S  + WT+ NL H L  Y F H  KGTPF   DQG    LT WEQ+D G Q T +RKFLT+ P+VLY + S  T Y       NT+++  +++ K P +H VRIFGIN
Sbjct:    5 TAHSEVNPNTRVMNSRGIWLSYVLAIGLLHVVLLSIPFVSVPVVWTLTNLIHNLGMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYDQVHFILNTVSLMSVLIPKLPQLHGVRIFGIN 151          
BLAST of FC925078 vs. ExPASy Swiss-Prot
Match: ORML1_MOUSE (ORM1-like protein 1 OS=Mus musculus GN=Ormdl1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.628e-27
Identity = 61/144 (42.36%), Postives = 85/144 (59.03%), Query Frame = 1
Query:  154 ADLNRNTEWFTYPGVWTTYILILFFAWLIVLSVFGCSPGMAWTIVNLAHFLITYHFFHWKKGTPF-AEDQGIYNGLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFFNTLAVFVLVVAKFPNMHKVRIFGIN 582
            +++N NT      G+W TY L +    +++LS+  CS  +AWT+ N+ H L  Y F H  KGTPF   DQG    LT WEQ+D G Q T +RKF T+ P++LY +AS  T Y       NT ++  +++ K P +H VRIFGIN
Sbjct:    8 SEVNPNTRVMNSRGMWLTYALGVGLLHIVLLSIPFCSVPVAWTLTNIIHNLGMYVFLHAVKGTPFETPDQGRARLLTHWEQLDYGVQFTSSRKFFTISPIILYFLASFYTKYDPTHFILNTASLLSVLIPKMPQLHGVRIFGIN 151          
BLAST of FC925078 vs. ExPASy Swiss-Prot
Match: ORML3_HUMAN (ORM1-like protein 3 OS=Homo sapiens GN=ORMDL3 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.642e-26
Identity = 60/147 (40.82%), Postives = 86/147 (58.50%), Query Frame = 1
Query:  145 TPPADLNRNTEWFTYPGVWTTYILILFFAWLIVLSVFGCSPGMAWTIVNLAHFLITYHFFHWKKGTPF-AEDQGIYNGLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFFNTLAVFVLVVAKFPNMHKVRIFGIN 582
            T  +++N NT      G+W +Y+L +    +++LS+   S  + WT+ NL H +  Y F H  KGTPF   DQG    LT WEQ+D G Q T +RKFLT+ P+VLY + S  T Y       NT+++  +++ K P +H VRIFGIN
Sbjct:    5 TAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYDQIHFVLNTVSLMSVLIPKLPQLHGVRIFGIN 151          
BLAST of FC925078 vs. ExPASy Swiss-Prot
Match: ORML3_DANRE (ORM1-like protein 3 OS=Danio rerio GN=ormdl3 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.642e-26
Identity = 59/147 (40.14%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  145 TPPADLNRNTEWFTYPGVWTTYILILFFAWLIVLSVFGCSPGMAWTIVNLAHFLITYHFFHWKKGTPF-AEDQGIYNGLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFFNTLAVFVLVVAKFPNMHKVRIFGIN 582
            T  +++N NT      G+W +Y+L +    +I+LS+   S  + WT+ NL H +  Y F H  KGTPF   DQG    LT WEQ+D G Q T +RKFLT+ P++LY + S  T Y       NT+++  +++ K P  H VR+FGIN
Sbjct:    5 TAHSEVNPNTRVMNSRGIWLSYVLGIGLLHIILLSIPFVSVPVVWTLTNLIHNMCMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIILYFLTSFYTKYDRVHFVINTISLLTVLIPKLPQFHGVRLFGIN 151          
BLAST of FC925078 vs. ExPASy Swiss-Prot
Match: ORML2_HUMAN (ORM1-like protein 2 OS=Homo sapiens GN=ORMDL2 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.642e-26
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = 1
Query:  154 ADLNRNTEWFTYPGVWTTYILILFFAWLIVLSVFGCSPGMAWTIVNLAHFLITYHFFHWKKGTPF-AEDQGIYNGLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFFNTLAVFVLVVAKFPNMHKVRIFGIN 582
            +++N NT      G+W  YI+++    +++LS+   S  + WT+ N+ H L TY F H  KGTPF   DQG    LT WEQ+D G Q T +RKFL++ P+VLYL+AS  T Y       NT ++  +++ K P  H VR+FGIN
Sbjct:    8 SEVNPNTRVMNSRGIWLAYIILVGLLHMVLLSIPFFSIPVVWTLTNVIHNLATYVFLHTVKGTPFETPDQGKARLLTHWEQMDYGLQFTSSRKFLSISPIVLYLLASFYTKYDAAHFLINTASLLSVLLPKLPQFHGVRVFGIN 151          
BLAST of FC925078 vs. ExPASy Swiss-Prot
Match: ORML1_XENLA (ORM1-like protein 1 OS=Xenopus laevis GN=ormdl1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.642e-26
Identity = 62/144 (43.06%), Postives = 86/144 (59.72%), Query Frame = 1
Query:  154 ADLNRNTEWFTYPGVWTTYILILFFAWLIVLSVFGCSPGMAWTIVNLAHFLITYHFFHWKKGTPF-AEDQGIYNGLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFFNTLAVFVLVVAKFPNMHKVRIFGIN 582
            +++N NT      G+W TY L +    +++LS+   S  +AWT+ N+ H L  Y F H  KGTPF   DQG    LT WEQ+D G Q T +RKFLT+ P++LY +AS  T Y     F NT ++  +++ K P +H VRIFGIN
Sbjct:    8 SEVNPNTRVMNSRGMWLTYALGVGMLHIVLLSIPFFSVPVAWTLTNVIHNLGMYVFLHAVKGTPFETPDQGKARLLTHWEQLDYGVQFTSSRKFLTISPIILYFLASFYTKYDPTHFFINTASLLSVLIPKLPQLHGVRIFGIN 151          
BLAST of FC925078 vs. ExPASy Swiss-Prot
Match: ORML3_PONAB (ORM1-like protein 3 OS=Pongo abelii GN=ORMDL3 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.145e-26
Identity = 60/147 (40.82%), Postives = 86/147 (58.50%), Query Frame = 1
Query:  145 TPPADLNRNTEWFTYPGVWTTYILILFFAWLIVLSVFGCSPGMAWTIVNLAHFLITYHFFHWKKGTPF-AEDQGIYNGLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFFNTLAVFVLVVAKFPNMHKVRIFGIN 582
            T  +++N NT      G+W +Y+L +    +++LS+   S  + WT+ NL H +  Y F H  KGTPF   DQG    LT WEQ+D G Q T +RKFLT+ P+VLY + S  T Y       NT+++  +++ K P +H VRIFGIN
Sbjct:    5 TAHSEVNPNTRVMNSRGIWLSYVLAIGLLHVVLLSIPFVSVPVVWTLTNLIHNMGMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYDQIHFVLNTVSLMSVLIPKLPQLHGVRIFGIN 151          
BLAST of FC925078 vs. ExPASy Swiss-Prot
Match: ORML2_BOVIN (ORM1-like protein 2 OS=Bos taurus GN=ORMDL2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.778e-26
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 1
Query:  154 ADLNRNTEWFTYPGVWTTYILILFFAWLIVLSVFGCSPGMAWTIVNLAHFLITYHFFHWKKGTPF-AEDQGIYNGLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFFNTLAVFVLVVAKFPNMHKVRIFGIN 582
            +++N NT      G+W  YI+++    +++LS+   S  + WT+ N+ H L+ Y F H  KGTPF   DQG    LT WEQ+D G Q T +RKFL++ P+VLYL+AS  T Y       NT ++  +++ K P  H VR+FGIN
Sbjct:    8 SEVNPNTRVMNSRGIWLAYIILVGLLHVVLLSIPFFSIPVVWTLTNVIHNLVMYVFLHTVKGTPFETPDQGKARLLTHWEQMDYGLQFTSSRKFLSISPIVLYLLASFYTKYDAAHFLINTASLLSVLLPKLPQFHGVRLFGIN 151          
The following BLAST results are available for this feature:
BLAST of FC925078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
YBA9_SCHPO1.940e-2739.57Uncharacterized protein C119.09c OS=Schizosaccharo... [more]
ORML3_MOUSE4.322e-2741.50ORM1-like protein 3 OS=Mus musculus GN=Ormdl3 PE=2... [more]
ORML3_RAT7.372e-2741.50ORM1-like protein 3 OS=Rattus norvegicus GN=Ormdl3... [more]
ORML1_MOUSE9.628e-2742.36ORM1-like protein 1 OS=Mus musculus GN=Ormdl1 PE=2... [more]
ORML3_HUMAN1.642e-2640.82ORM1-like protein 3 OS=Homo sapiens GN=ORMDL3 PE=2... [more]
ORML3_DANRE1.642e-2640.14ORM1-like protein 3 OS=Danio rerio GN=ormdl3 PE=2 ... [more]
ORML2_HUMAN1.642e-2641.67ORM1-like protein 2 OS=Homo sapiens GN=ORMDL2 PE=2... [more]
ORML1_XENLA1.642e-2643.06ORM1-like protein 1 OS=Xenopus laevis GN=ormdl1 PE... [more]
ORML3_PONAB2.145e-2640.82ORM1-like protein 3 OS=Pongo abelii GN=ORMDL3 PE=2... [more]
ORML2_BOVIN4.778e-2640.97ORM1-like protein 2 OS=Bos taurus GN=ORMDL2 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YP18FM1 TF Citrus clementina cDNA clone KN0AAP1YP18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925078 ID=FC925078; Name=FC925078; organism=Citrus clementina; type=EST; length=758bp
GAACCCAAAATTCTCCATAACAGAACCGTCTAATCGAAGAGAGCTGGTAA
GCAGTTTGCTTAGGGTTTACAAAAAATTATTATAATAATAATTTGAAAAA
GAAAAAAGAGAAATCATATGATGGCGAATCTATACGTGAAGGCGACGCCA
CCGGCGGATCTGAACAGAAACACGGAGTGGTTCACGTATCCAGGAGTATG
GACTACGTATATACTGATACTATTCTTCGCTTGGCTTATCGTTCTCTCTG
TTTTCGGTTGCTCTCCTGGCATGGCTTGGACCATTGTCAATCTCGCCCAT
TTTCTCATCACGTATCACTTCTTTCACTGGAAAAAAGGAACACCCTTTGC
TGAAGACCAGGGCATTTATAACGGGTTGACTTGGTGGGAGCAGATAGACA
ATGGACAGCAGCTTACACGCAATAGAAAGTTCCTAACTGTTGTACCTGTG
GTGCTGTACTTGATAGCCTCGCACACAACTGACTACCAACATCCAATGCT
CTTTTTCAACACTTTAGCAGTGTTTGTTCTTGTTGTTGCCAAGTTCCCGA
ATATGCACAAGGTCCGGATTTTTGGAATCAATGCAGATAAGTGAGTTGGT
ATTGTGATAAAGATAGATGGGATAACCATTACCTACTCAAAAGGAACTGC
TCCTATTCTGTATAGAAGACTGAACTGTAATGAACAATATCGTATGTAAT
GTTCTTTTGCTGGCTGCTTTCACAAGTTGTCTCTTAAATAACGAAAGAAT
AAGTGTAT
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