FC925080

Overview
NameFC925080
Unique NameFC925080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length441
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1818 contig Ccv1_Contig1818:189..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925080 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   37 QEIDCGGLCTPRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGPCYTDMTTHGNKTQCP 228
            ++IDCGG C  RC L SRP LCNRACGTCC RC CVPPGT+GN E C PCY  +TTHGNK +CP
Sbjct:   42 KKIDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETC-PCYASLTTHGNKRKCP 104          
BLAST of FC925080 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.401e-21
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   25 GRLMQEIDCGGLCTPRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGPCYTDMTTHGNKTQCP 228
            G  + +IDCGG C  RCS  SRPNLC RAC +CC RC CVPPGTAGN  LC PCY  +TT G + +CP
Sbjct:   33 GEGVVKIDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGGRLKCP 99          
BLAST of FC925080 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.799e-20
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   25 GRLMQEIDCGGLCTPRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGPCYTDMTTHGNKTQCP 228
            G  + +IDCGG C  RCS  SR  LC RAC +CC RC CVPPGT+GN  LC PCY  +TTHG + +CP
Sbjct:   33 GEGVVKIDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLC-PCYASITTHGGRLKCP 99          
BLAST of FC925080 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 7.799e-20
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   37 QEIDCGGLCTPRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGPCYTDMTTHGNKTQCP 228
            ++IDCG  C  RC L  RP LC+RACGTCC RC CVPPGT GN + C  CY  +TTHG + +CP
Sbjct:   36 KKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGRRKCP 98          
The following BLAST results are available for this feature:
BLAST of FC925080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SNAK2_SOLTU1.052e-2470.31Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA3_ARATH5.401e-2161.76Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH7.799e-2058.82Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA1_ARATH7.799e-2059.38Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP1YP20FM1 TF Citrus clementina cDNA clone KN0AAP1YP20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925080 ID=FC925080; Name=FC925080; organism=Citrus clementina; type=EST; length=441bp
ATGCTTATTGTGTAAGATGCAAACGGAAGGCTCATGCAGGAAATTGATTG
TGGAGGTTTGTGCACTCCGAGGTGTAGTCTTCACTCGAGGCCGAACTTGT
GCAACAGGGCATGTGGCACGTGCTGTGTGAGGTGCAAGTGTGTGCCACCT
GGTACTGCAGGGAACAGAGAGCTCTGTGGACCATGCTACACTGATATGAC
CACGCATGGAAACAAGACCCAATGTCCTTAGACCCAATGGACTTGGTTTA
TTTTTAGCTTTAAATTTAGGTCCATCTCGAACGGTTTGGCTATGTATGTG
TCTATCAAGCTTATGTTAAGTGTGTGATCTATGTCTAAAAATCTAACTTG
CTGTTTATGTTTCTATGGCCATACTAGGCTCTTACTTATTGTATTATTGT
ATCATATTGACTGCTAGGAATTTCTGGAAATTTACCTCGTG
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