FC925082

Overview
NameFC925082
Unique NameFC925082
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14139 contig Ccv1_Contig14139:707..1362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925082 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 420.239 bits (1079), Expect = 4.553e-117
Identity = 203/218 (93.12%), Postives = 213/218 (97.71%), Query Frame = 2
Query:    2 AELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIDDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDELHTLD 655
            AELSKLAANAFLAQRISSVNAMSALCEATGANV QV+++VGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKI+DYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAIDVC+GLLGDKA LSIYDPQVTEDQIQRDL+MNKFDWDHP+HLQP SPTTVK+VSVVWDAYEATKDAHG+CILTEWDE  TLD
Sbjct:  212 AELSKLAANAFLAQRISSVNAMSALCEATGANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILTEWDEFKTLD 429          
BLAST of FC925082 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 416.772 bits (1070), Expect = 5.034e-116
Identity = 201/218 (92.20%), Postives = 213/218 (97.71%), Query Frame = 2
Query:    2 AELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIDDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDELHTLD 655
            AELSKLAANAFLAQRISSVNAMSALCEATGA+V+QV++AVGTDSRIGPKFLN+SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKI+DYQKSRFVNRVV+SMFN+VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL DKARLSIYDPQVTEDQIQRDL+MNKFDWDHPLHLQPMSPTTVKQV+V WDAYEATKDAHG+CI+TEWDE   LD
Sbjct:  212 AELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSYAVGTDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVSSMFNSVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLEDKARLSIYDPQVTEDQIQRDLSMNKFDWDHPLHLQPMSPTTVKQVTVTWDAYEATKDAHGICIMTEWDEFKNLD 429          
BLAST of FC925082 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 1.371e-113
Identity = 194/218 (88.99%), Postives = 212/218 (97.25%), Query Frame = 2
Query:    2 AELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIDDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDELHTLD 655
            AELSKLAANAFLAQRISSVNAMSALCE+TGA+V+QV++AVGTDSRIG KFLNASVGFGGSCFQKDILNLVYIC+CNGLPEVAEYWKQVIKI+DYQK+RFVNR+V+SMFNTVSNKK+A+LGFAFKKDTGDTRETPAIDVCKGLLGDKA++SIYDPQVTE+QIQRDL+M KFDWDHPLHLQPMSPTTVKQVSV WDAYEATKDAH VC+LTEWDE  +LD
Sbjct:  212 AELSKLAANAFLAQRISSVNAMSALCESTGADVTQVSYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICQCNGLPEVAEYWKQVIKINDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLLGDKAQISIYDPQVTEEQIQRDLSMKKFDWDHPLHLQPMSPTTVKQVSVTWDAYEATKDAHAVCVLTEWDEFKSLD 429          
BLAST of FC925082 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.105e-68
Identity = 137/219 (62.56%), Postives = 166/219 (75.80%), Query Frame = 2
Query:    2 AELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIDDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQ-VSVVWDAYEATKDAHGVCILTEWDELHTLD 655
            +ELSKLAANAFLAQRISS+N++SA+CEATGA+VS+VA AVG DSRIG KFL ASVGFGGSCFQKDILNL+YICE   LPEVA YW+QVI +++YQK RF  +++ S+FNTVS+K+IA+LGFAFKK+TGDTRET AI VC+ LL + A L IYDP+V  +QI  DLT       HP   +  SP  VK+ V +  D Y A +  H + I TEWDE   LD
Sbjct:  212 SELSKLAANAFLAQRISSINSLSAVCEATGADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVIDMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAITVCQTLLEEGAALDIYDPKVEPEQIIDDLT-------HPSVTE--SPEKVKKAVQIHSDPYSAVRATHALVICTEWDEFVDLD 421          
BLAST of FC925082 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.145e-66
Identity = 128/218 (58.72%), Postives = 164/218 (75.23%), Query Frame = 2
Query:    2 AELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIDDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDELHTLD 655
            +ELSKLAANAFLAQRISS+N++SALCEATGA+V +VA A+GTD RIG KFL ASVGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI ++DYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A+L IYDP+V ++QI  DL+      D+ +          + V++  D YEA   AH + I TEWD    LD
Sbjct:  216 SELSKLAANAFLAQRISSINSISALCEATGADVEEVARAIGTDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAKLHIYDPKVPKEQIILDLSHPGVSEDNQVS---------RLVTISQDPYEACDGAHALVICTEWDMFKELD 424          
BLAST of FC925082 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.816e-65
Identity = 128/218 (58.72%), Postives = 160/218 (73.39%), Query Frame = 2
Query:    2 AELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIDDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDELHTLD 655
            +ELSKLAANAFLAQRISS+N++SALCEATGA+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI ++DYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD    LD
Sbjct:  216 SELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTEWDMFKELD 424          
BLAST of FC925082 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.816e-65
Identity = 128/218 (58.72%), Postives = 160/218 (73.39%), Query Frame = 2
Query:    2 AELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIDDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDELHTLD 655
            +ELSKLAANAFLAQRISS+N++SALCEATGA+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI ++DYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD    LD
Sbjct:  216 SELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTEWDMFKELD 424          
BLAST of FC925082 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.045e-65
Identity = 127/218 (58.26%), Postives = 160/218 (73.39%), Query Frame = 2
Query:    2 AELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIDDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDELHTLD 655
            +ELSKLAANAFLAQRISS+N++SALCEATGA+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI ++DYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH + I TEWD    LD
Sbjct:  216 SELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQVS---------RLVTISKDPYEACDGAHALVICTEWDMFKELD 424          
BLAST of FC925082 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 4.045e-65
Identity = 127/218 (58.26%), Postives = 159/218 (72.94%), Query Frame = 2
Query:    2 AELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIDDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDELHTLD 655
            +ELSKL ANAFLAQRISS+N++SALCEATGA+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI ++DYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD    LD
Sbjct:  216 SELSKLTANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSKDDQV---------ARLVTISKDPYEACDGAHAVVICTEWDMFKELD 424          
BLAST of FC925082 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.622e-64
Identity = 125/218 (57.34%), Postives = 159/218 (72.94%), Query Frame = 2
Query:    2 AELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIDDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDELHTLD 655
            +ELSKLAANAFLAQRISS+N++SALCE+TGA+V +VA A+G D RIG KFL ASVGFGG CFQKD+LNLVY+CE   LPEVA YW+QVI ++DYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH + I TEWD    LD
Sbjct:  216 SELSKLAANAFLAQRISSINSISALCESTGADVEEVATAIGMDQRIGNKFLKASVGFGGGCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQVS---------RLVTISKDPYEACDGAHALVICTEWDMFKELD 424          
The following BLAST results are available for this feature:
BLAST of FC925082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
UGDH_SOYBN4.553e-11793.12UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH1_ARATH5.034e-11692.20Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH2_ARATH1.371e-11388.99Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH_DROME5.105e-6862.56UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]
UGDH_CHICK2.145e-6658.72UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_PONAB1.816e-6558.72UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
UGDH_HUMAN1.816e-6558.72UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_MOUSE4.045e-6558.26UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]
UGDH_BOVIN4.045e-6558.26UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_RAT2.622e-6457.34UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YP24FM1 TF Citrus clementina cDNA clone KN0AAP1YP24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925082 ID=FC925082; Name=FC925082; organism=Citrus clementina; type=EST; length=656bp
TGCAGAGCTTTCTAAGCTTGCAGCCAATGCTTTCTTGGCACAGAGGATCT
CATCTGTTAATGCCATGTCAGCTCTCTGCGAGGCAACTGGAGCTAATGTC
AGTCAGGTGGCATTTGCTGTTGGTACAGACTCTAGGATTGGGCCCAAATT
CTTGAATGCTAGTGTTGGGTTCGGTGGCTCCTGCTTCCAGAAGGATATTT
TGAATCTGGTTTACATCTGCGAGTGCAATGGCCTTCCAGAGGTGGCTGAG
TACTGGAAACAAGTCATTAAGATCGATGATTACCAGAAAAGCCGTTTTGT
GAACCGCGTAGTTGCCTCTATGTTCAACACGGTTTCAAACAAGAAGATTG
CCGTTCTGGGATTTGCCTTCAAGAAGGATACCGGTGACACCAGAGAGACC
CCAGCCATTGATGTCTGCAAGGGGCTTTTGGGAGACAAAGCTCGGTTGAG
CATATACGACCCACAGGTCACCGAGGACCAGATCCAAAGGGACCTTACAA
TGAACAAGTTTGACTGGGACCATCCTCTTCACCTCCAGCCAATGAGTCCC
ACCACGGTGAAGCAAGTGAGCGTGGTCTGGGATGCCTATGAAGCAACAAA
AGATGCCCATGGTGTCTGCATCTTGACCGAGTGGGATGAGTTACATACTC
TTGACT
back to top