FC925083

Overview
NameFC925083
Unique NameFC925083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4950 contig Ccv1_Contig4950:95..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925083 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.049e-49
Identity = 96/152 (63.16%), Postives = 121/152 (79.61%), Query Frame = 2
Query:    2 TVTLSAPCMVKAAPRNQLSRNLIKSPT---SLGSVKGISKTFGLKCSPNFQASM--AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            TV +S+  M KA  R+Q +  LI + +   S+GS K +S++FGLKCS N   +   AVYK+KL+GP G+E EFE Q+DQYILDAAEEAGVDLPYSCRAGACSTCAG++VSG+VDQSDGSFL+D+ +E GY+LTC++YP SDCVI +HKE EL
Sbjct:    3 TVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154          
BLAST of FC925083 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.126e-46
Identity = 92/149 (61.74%), Postives = 110/149 (73.83%), Query Frame = 2
Query:    2 TVTLSAPCMVKAAPRN-QLSRNLIKSPTSLGSVKGISKTFGLKCSPNFQAS-MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            T T +  C +    R  Q S+  +KSP+SL     ++K   LK S     S MAVYK+KL+GP+GEEHEF+A +D YILDAAE AGV+LPYSCRAGACSTCAGK+ SGSVDQSDGSFLDD Q E GY+LTC+SYP SDCVI +HKE +L
Sbjct:    3 TSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151          
BLAST of FC925083 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.193e-39
Identity = 72/96 (75.00%), Postives = 87/96 (90.62%), Query Frame = 2
Query:  155 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            AVYK+KLIGP+GEE+EFE Q+DQ+ILDAAEEAGVDLPYSCRAGACSTCAG++V G VDQS+GSFL+D+  E G++LTC++YP SDCVI +HKE EL
Sbjct:    2 AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97          
BLAST of FC925083 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.856e-38
Identity = 72/96 (75.00%), Postives = 84/96 (87.50%), Query Frame = 2
Query:  155 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            AVYK+KLIGP G+E+EF+  +DQYILDAAEEAGVDLPYSCRAGACSTCAGK+  G VDQSDGSFL+D+  E GY+LTC++YP SD VI +HKEEEL
Sbjct:    2 AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97          
BLAST of FC925083 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.136e-38
Identity = 74/120 (61.67%), Postives = 94/120 (78.33%), Query Frame = 2
Query:   89 GSVKGISKTFGLKCSPNFQASMA--VYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            G  +  ++  G + S  F AS A  ++K+KL+GP G EHEFEA +D YIL+AAE AGV+LP+SCRAG+CSTCAG++ +G VDQS+GSFLDD QM  GYLLTCISYP +DCVI +HKEE+L
Sbjct:   35 GHARQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          
BLAST of FC925083 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 7.799e-37
Identity = 72/98 (73.47%), Postives = 85/98 (86.73%), Query Frame = 2
Query:  152 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            MA YK+ LI   +G     E  +DQYILDAAEEAG+DLPYSCRAGACSTCAGKL+SG+VDQSD SFLDD+Q+EAGY+LTC++YPTSDCVI++HKEEEL
Sbjct:    1 MATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98          
BLAST of FC925083 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.269e-36
Identity = 77/129 (59.69%), Postives = 97/129 (75.19%), Query Frame = 2
Query:   71 KSPTSLGSVK--GISKTFGLKCSP---NFQASMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            ++P SL S+        FGLK S        +MA YK+K I P+GE+ E E +ED Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSGS+DQSD SFLDD QM  GY+LTC++YPTSD VI++HKEE +
Sbjct:   20 QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147          
BLAST of FC925083 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.964e-36
Identity = 76/126 (60.32%), Postives = 95/126 (75.40%), Query Frame = 2
Query:   77 PTSLGSVKGISKTF-GLKCS---PNFQASMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            P S+ + K  S  F GLK S    +   +MA YK+KL+ P G + EFE   D YILD AEE G+DLPYSCRAG+CS+CAGK+V G VDQSDGSFLDD Q+EAG++LTC++YPTSD VI++HKEE+L
Sbjct:   23 PMSVTTTKAFSNGFLGLKTSLKRGDLAVAMASYKVKLVTPDGTQ-EFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDL 147          
BLAST of FC925083 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.871e-36
Identity = 70/97 (72.16%), Postives = 84/97 (86.60%), Query Frame = 2
Query:  152 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            MA Y +KLI P GE +  E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ +GSVDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct:    1 MASYTVKLITPDGE-NSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of FC925083 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.055e-36
Identity = 70/97 (72.16%), Postives = 83/97 (85.57%), Query Frame = 2
Query:  152 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            MA Y +KLI P GE    E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ +GSVDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct:    1 MASYTVKLITPDGES-SIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
The following BLAST results are available for this feature:
BLAST of FC925083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER3_ARATH1.049e-4963.16Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER3_MAIZE4.126e-4661.74Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER2_RAPSA2.193e-3975.00Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER1_RAPSA1.856e-3875.00Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER6_MAIZE4.136e-3861.67Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER_MASLA7.799e-3773.47Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER1_ARATH2.269e-3659.69Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER1_PEA2.964e-3660.32Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]
FER_SYNY43.871e-3672.16Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_SYNY35.055e-3672.16Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YC01FM1 TF Citrus clementina cDNA clone KN0AAP8YC01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925083 ID=FC925083; Name=FC925083; organism=Citrus clementina; type=EST; length=650bp
GACTGTGACACTTAGCGCCCCGTGCATGGTTAAAGCTGCACCCAGAAATC
AACTATCAAGGAACTTAATCAAGAGCCCAACCTCACTTGGATCTGTTAAG
GGCATCTCCAAGACCTTTGGCCTGAAATGCTCTCCCAATTTCCAAGCATC
AATGGCTGTCTACAAGATTAAGCTGATTGGACCTAAGGGTGAAGAGCATG
AGTTTGAGGCCCAGGAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCA
GGAGTCGACCTGCCCTATTCCTGCCGCGCTGGTGCTTGCTCGACGTGTGC
TGGGAAGTTGGTGTCTGGTTCAGTTGACCAGTCAGATGGTTCCTTCCTCG
ATGACAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTTCATACCCG
ACTTCAGATTGCGTGATTCAGTCTCACAAGGAAGAAGAGCTTTGCTGAGT
GCCTTTGCTGTCAGTTGGTTTAGGGTTTTTCAAGTATGAACTGTGATCAA
GTGCCTGAGTATGCTGATAAGGTTTCTCATGGGCCTACAATATTTTTTAG
ATTTCAGCGTGTTGTCTGGTGCAATGGAATCTGTAATTTTTCATTTAGTT
ATACTATTACTGGCATTTTGGGATTTCATTTCAAAAAAAAAAAAAAAAAA
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