FC925085

Overview
NameFC925085
Unique NameFC925085
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14120 contig Ccv1_Contig14120:65..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925085 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 8.051e-18
Identity = 56/175 (32.00%), Postives = 91/175 (52.00%), Query Frame = 2
Query:  218 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFP----VGTKVKCFADAGYFINAK 724
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SSK        +G+LS++ + NP ++N N + + YC    ++G     +  N   F G+ + Q V+ +L+ KG+  A+  +L+G SAGG   +L+ D    L         +V+  AD+G+F++ K
Sbjct:  108 CNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVRGLADSGWFLDNK 279          
BLAST of FC925085 vs. ExPASy Swiss-Prot
Match: NOTUM_HUMAN (Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.342e-17
Identity = 55/175 (31.43%), Postives = 93/175 (53.14%), Query Frame = 2
Query:  218 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD----NFRALFPVGTKVKCFADAGYFINAK 724
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SS+   +    +G+LS++ + NP ++N N + + YC    ++G   + +  N   F GA + Q V+ +L+ +G+  A+  +L+G SAGG   +L+ D        L     +V+  AD+G+F++ K
Sbjct:  101 CNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSG-ASSKSEKNEYAFMGALIIQEVVRELLGRGLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLDNK 272          
The following BLAST results are available for this feature:
BLAST of FC925085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOTUM_MOUSE8.051e-1832.00Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
NOTUM_HUMAN2.342e-1731.43Protein notum homolog OS=Homo sapiens GN=NOTUM PE=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YC07FM1 TF Citrus clementina cDNA clone KN0AAP8YC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925085 ID=FC925085; Name=FC925085; organism=Citrus clementina; type=EST; length=751bp
TATTTCTTCCCAATGCACTAACTTGGGCTCCTTTTGCATACTCTTTAAAC
TAGTCCCATTTGCAGATAATTTTTTTTTTTGGCCTCATTTCAGAATGGTT
GCTGCAAGAATGGGCCAATGGTTGAATCTTTTAGTATGTGCACTCATATT
ACTGAAAGCTGACGGCTTTAATGTAGGAATCACTTATGTTGAGAATGCTG
TAGCGAAAGGAGCTGTTTGTTTGGATGGTAGCCCGCCTGCTTACCATTTT
GATAAGGGGTTTGGTGCTGGGATCAATAATTGGTTGGTTCACATTGAGGG
AGGAGGATGGTGCAACAATGTCACAACTTGTCTTGAACGTAAGAAAACCC
GTTTAGGTTCATCTAAGCAAATGGTCAAGGTAGTTGCTTTCTCTGGGATG
CTGAGCAACAAGCAAAAATTTAACCCAGACTTCTACAATTGGAATAGAAT
CAAGGTTAGATACTGTGATGGTGCATCGTTTACTGGAGATGTGGAGGCTG
TCAATCCAGCAAATAACCTTCACTTCAGAGGAGCAAGGGTTTTTCAAGCT
GTCATGGAGGATCTAATGGCTAAAGGGATGAAAAATGCTCAAAATGCTGT
TCTTTCTGGCTGCTCAGCTGGGGGGTTGACTTCAATTTTGCATTGTGATA
ACTTCCGAGCTCTCTTCCCTGTGGGTACTAAAGTAAAATGCTTTGCAGAT
GCTGGTTATTTTATCAACGCGAAGGATGTTTCTGGAGCAAGTCACATTGA
G
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