FC925088

Overview
NameFC925088
Unique NameFC925088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length782
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925088_ssr61 microsatellite FC925088_ssr61:61..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13258 contig Ccv1_Contig13258:116..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925088 vs. ExPASy Swiss-Prot
Match: UBQL2_HUMAN (Ubiquilin-2 OS=Homo sapiens GN=UBQLN2 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18
Identity = 60/190 (31.58%), Postives = 89/190 (46.84%), Query Frame = 3
Query:  228 SSVETFKAALAEKCEVPPQQQRLIYKGRILKDDQTLKSYGLEADHTVHLV-----RGFXXXXXXXXXXXXXXXXXXXXXXXXRPVSTNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEFEQVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLR 782
            SSV+ FK A++++ +    Q  LI+ G+ILKD  TL  +G+    TVHLV     R                           P+STN                                       Q+QQQL  +P +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +R
Sbjct:   52 SSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKSQNRPQGQSTQPSNAAGTNTTSASTPRSNSTPISTNSNPFGLGSLGGLAGLSSLGLSSTNFSELQ---------SQMQQQLMASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMR 232          
BLAST of FC925088 vs. ExPASy Swiss-Prot
Match: UBQL4_MOUSE (Ubiquilin-4 OS=Mus musculus GN=Ubqln4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.846e-15
Identity = 31/64 (48.44%), Postives = 55/64 (85.94%), Query Frame = 3
Query:  591 EQVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLR 782
            +Q+Q+QL  NP ++ +IM  P+VQ++M+NP++MR++IM NPQM+++++RNPE++H+LN+P  +R
Sbjct:  178 QQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMR 241          
BLAST of FC925088 vs. ExPASy Swiss-Prot
Match: UBQL4_HUMAN (Ubiquilin-4 OS=Homo sapiens GN=UBQLN4 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.846e-15
Identity = 31/64 (48.44%), Postives = 55/64 (85.94%), Query Frame = 3
Query:  591 EQVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLR 782
            +Q+Q+QL  NP ++ +IM  P+VQ++M+NP++MR++IM NPQM+++++RNPE++H+LN+P  +R
Sbjct:  183 QQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMR 246          
BLAST of FC925088 vs. ExPASy Swiss-Prot
Match: UBQL1_RAT (Ubiquilin-1 OS=Rattus norvegicus GN=Ubqln1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.971e-14
Identity = 33/63 (52.38%), Postives = 52/63 (82.54%), Query Frame = 3
Query:  594 QVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLR 782
            Q+Q+QL  NP +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P+ +R
Sbjct:  165 QMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPNIMR 227          
BLAST of FC925088 vs. ExPASy Swiss-Prot
Match: UBQL2_MOUSE (Ubiquilin-2 OS=Mus musculus GN=Ubqln2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.574e-14
Identity = 33/63 (52.38%), Postives = 51/63 (80.95%), Query Frame = 3
Query:  594 QVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLR 782
            Q+QQQL  +P +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +R
Sbjct:  181 QMQQQLLASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMR 243          
BLAST of FC925088 vs. ExPASy Swiss-Prot
Match: UBQL1_PONAB (Ubiquilin-1 OS=Pongo abelii GN=UBQLN1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.574e-14
Identity = 33/63 (52.38%), Postives = 51/63 (80.95%), Query Frame = 3
Query:  594 QVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLR 782
            Q+Q+QL  NP +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +R
Sbjct:  174 QMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMR 236          
BLAST of FC925088 vs. ExPASy Swiss-Prot
Match: UBQL1_MOUSE (Ubiquilin-1 OS=Mus musculus GN=Ubqln1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.574e-14
Identity = 33/63 (52.38%), Postives = 51/63 (80.95%), Query Frame = 3
Query:  594 QVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLR 782
            Q+Q+QL  NP +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +R
Sbjct:  165 QMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMR 227          
BLAST of FC925088 vs. ExPASy Swiss-Prot
Match: UBQL1_HUMAN (Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.574e-14
Identity = 33/63 (52.38%), Postives = 51/63 (80.95%), Query Frame = 3
Query:  594 QVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLR 782
            Q+Q+QL  NP +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +R
Sbjct:  174 QMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMR 236          
BLAST of FC925088 vs. ExPASy Swiss-Prot
Match: UBQL_DICDI (Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.488e-14
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 3
Query:  177 NIRCSNGTKFSVDIDLESSVETFKAALAEKCEVPPQQQRLIYKGRILKDDQTLKSYGLEADHTVHLVRG 383
            NI+ S   KF VD++L  +V  FK  +A KC +P  QQR+IY GRILKD QTL    ++  HTVHLV+G
Sbjct:    5 NIKSSTDNKFDVDVELGITVADFKKVIATKCSIPADQQRIIYSGRILKDHQTLDEIKIQDGHTVHLVKG 73          
BLAST of FC925088 vs. ExPASy Swiss-Prot
Match: DSK2_SCHPO (Deubiquitination-protection protein dph1 OS=Schizosaccharomyces pombe GN=dph1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 29/67 (43.28%), Postives = 49/67 (73.13%), Query Frame = 3
Query:  180 IRCSNGTKFSVDIDLESSVETFKAALAEKCEVPPQQQRLIYKGRILKDDQTLKSYGLEADHTVHLVR 380
            I+ +N  K++V +D ESSV   K A+A   ++  ++QRLIY GR+LKD+++LK+Y ++  H++HLV+
Sbjct:    8 IKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVK 74          
The following BLAST results are available for this feature:
BLAST of FC925088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
UBQL2_HUMAN1.722e-1831.58Ubiquilin-2 OS=Homo sapiens GN=UBQLN2 PE=1 SV=2[more]
UBQL4_MOUSE8.846e-1548.44Ubiquilin-4 OS=Mus musculus GN=Ubqln4 PE=1 SV=1[more]
UBQL4_HUMAN8.846e-1548.44Ubiquilin-4 OS=Homo sapiens GN=UBQLN4 PE=1 SV=2[more]
UBQL1_RAT1.971e-1452.38Ubiquilin-1 OS=Rattus norvegicus GN=Ubqln1 PE=1 SV... [more]
UBQL2_MOUSE2.574e-1452.38Ubiquilin-2 OS=Mus musculus GN=Ubqln2 PE=1 SV=1[more]
UBQL1_PONAB2.574e-1452.38Ubiquilin-1 OS=Pongo abelii GN=UBQLN1 PE=2 SV=1[more]
UBQL1_MOUSE2.574e-1452.38Ubiquilin-1 OS=Mus musculus GN=Ubqln1 PE=1 SV=1[more]
UBQL1_HUMAN2.574e-1452.38Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2[more]
UBQL_DICDI7.488e-1452.17Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=... [more]
DSK2_SCHPO5.933e-1143.28Deubiquitination-protection protein dph1 OS=Schizo... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YB01FM1 TF Citrus clementina cDNA clone KN0AAP3YB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925088 ID=FC925088; Name=FC925088; organism=Citrus clementina; type=EST; length=782bp
CGCAAACTCGCGCCTCTAAGATCGTTTAACTGACCTCCGGATTCTTCATT
CACCACAACCAACAAACAAACAAATTTTATTGTACCGTCTTAGTTATTGG
ATTCGTTGGGCCTCCGGCAGGGATGGGGGCTGGAGATGAGGTAAGCGAAT
CGAGCGGAGGAGAGGGAGTAAAGGTGAATATCCGATGCTCGAACGGCACA
AAATTTTCGGTGGATATCGATCTGGAATCCAGCGTTGAAACATTCAAAGC
GGCGTTGGCGGAAAAGTGCGAGGTTCCGCCTCAGCAACAGCGGTTGATTT
ATAAAGGTCGGATCTTGAAGGACGATCAAACCCTCAAAAGCTATGGTTTG
GAGGCAGATCACACTGTGCACTTGGTTCGTGGTTTTGCACCTGCTGCATC
TACAAACAATGCTGCGCCAACCAACTCTGGAGGTTCAACTACTACTCCAA
ACAGCACAAGGCCCGTGAGTACTAATGAAGGTGATGCTCTTGGAGGAGCT
GGTCTTGGAGCTTCTCTGTTTCCTGGACTTGGCATCAATGGTTTAGGTGG
CAGCGGAGGTGGTTTGTTTGGAGCTGGACTTCCAGAATTTGAACAAGTGC
AGCAACAACTGACCCGGAACCCCAACATTATGAGAGAGATCATGAATATG
CCTGTCGTGCAGAATCTTATGAATAACCCTGAGATAATGCGAAACTTGAT
AATGAACAATCCTCAAATGCGTGAAATTATTGATCGAAACCCTGAGCTAG
CACACATACTAAATGACCCTAGCACTCTGCGT
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