FC925092

Overview
NameFC925092
Unique NameFC925092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length174
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10914 contig Ccv1_Contig10914:518..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.445e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVESSDTIDNVKAKIQDKE IPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.445e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVESSDTIDNVKAKIQDKE IPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.445e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVESSDTIDNVKAKIQDKE IPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.445e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVESSDTIDNVKAKIQDKE IPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.445e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVESSDTIDNVKAKIQDKE IPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.445e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVESSDTIDNVKAKIQDKE IPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.445e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVESSDTIDNVKAKIQDKE IPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.445e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVESSDTIDNVKAKIQDKE IPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.445e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVESSDTIDNVKAKIQDKE IPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.445e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVESSDTIDNVKAKIQDKE IPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
The following BLAST results are available for this feature:
BLAST of FC925092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
UBIQ_WHEAT3.445e-2494.74Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN3.445e-2494.74Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU3.445e-2494.74Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC3.445e-2494.74Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR3.445e-2494.74Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA3.445e-2494.74Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ3.445e-2494.74Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY3.445e-2494.74Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE3.445e-2494.74Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO3.445e-2494.74Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YB03FM1 TF Citrus clementina cDNA clone KN0AAP3YB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925092 ID=FC925092; Name=FC925092; organism=Citrus clementina; type=EST; length=174bp
TCTTCATCGAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGT
TCAGATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAACGGAT
CCCACCAGATCAACAAAGATTGATCTTTGCCGGGAAACAATTGGAAGACG
GCCGCACGTTGGCTGACTATAACA
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