FC925093

Overview
NameFC925093
Unique NameFC925093
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3762 contig Ccv1_Contig3762:2..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925093 vs. ExPASy Swiss-Prot
Match: ASD1_ARATH (Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thaliana GN=ASD1 PE=1 SV=1)

HSP 1 Score: 429.869 bits (1104), Expect = 6.935e-120
Identity = 188/243 (77.37%), Postives = 218/243 (89.71%), Query Frame = 3
Query:    3 VSNWTRVETLLEAKETNPNARLQLTTSREGIIWFDQVSAMPLDTYKGHGFRNDLFQMLANLKPRFVRFPGGCFVEGEWLRNAFRWKASIGPWENRPGHFGDVWMYWTDDGLGYFEFLQLAEDLGALPIWVFNNGISHTDEVDTSAVLPFVQEALDGIEFARGDPNSTWGSVRAAMGHPDPFDLRYVAVGNEDCGKKNYRGNYLKFYDAIKRTYPDIGIISNCDGSSSPLDHKADFYDFHIYTS 731
            VS W + E LLEAK T+P+ARLQLTT+++G IW DQVSAMP+DT+KGHGFRNDLFQM+A++KPRF+RFPGGCFVEGEWL NAFRWK ++GPWE RPGHFGDVW YWTDDGLG+FEF Q+AED+GA PIWVFNNGISH DEV+T++++PFVQEALDGIEFARGD NSTWGSVRA MG  +PF+L+YVA+GNEDCGK  YRGNY+ FYDAIK+ YPDI IISNCDGSS PLDH AD+YD+HIYTS
Sbjct:  198 VSKWIKKEVLLEAKATDPSARLQLTTTKKGSIWIDQVSAMPVDTHKGHGFRNDLFQMMADIKPRFIRFPGGCFVEGEWLSNAFRWKETVGPWEERPGHFGDVWKYWTDDGLGHFEFFQMAEDIGAAPIWVFNNGISHNDEVETASIMPFVQEALDGIEFARGDANSTWGSVRAKMGRQEPFELKYVAIGNEDCGKTYYRGNYIVFYDAIKKAYPDIKIISNCDGSSHPLDHPADYYDYHIYTS 440          
BLAST of FC925093 vs. ExPASy Swiss-Prot
Match: ASD2_ARATH (Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thaliana GN=ASD2 PE=2 SV=1)

HSP 1 Score: 415.616 bits (1067), Expect = 1.354e-115
Identity = 183/240 (76.25%), Postives = 211/240 (87.92%), Query Frame = 3
Query:    9 NWTRVETLLEAKETNPNARLQLTTSREGIIWFDQVSAMPLDTYKGHGFRNDLFQMLANLKPRFVRFPGGCFVEGEWLRNAFRWKASIGPWENRPGHFGDVWMYWTDDGLGYFEFLQLAEDLGALPIWVFNNGISHTDEVDTSAVLPFVQEALDGIEFARGDPNSTWGSVRAAMGHPDPFDLRYVAVGNEDCGKKNYRGNYLKFYDAIKRTYPDIGIISNCDGSSSPLDHKADFYDFHIYT 728
            NWT+ E LLEA  T+  ARLQ TT+++G IWFDQVSAMP+DTYKGHGFRNDLFQM+ +LKPRF+RFPGGCFVEG+WL NAFRWK ++  WE RPGH+GDVW YWTDDGLG+FEF QLAEDLGA PIWVFNNGISH D+V+T  V+PFVQEA+DGIEFARGD NSTWGSVRAAMGHP+PF+L+YVAVGNEDC K  YRGNYL+FY+AIK+ YPDI IISNCD S+ PLDH AD++D+HIYT
Sbjct:  199 NWTKKEMLLEANGTDNGARLQFTTTKKGSIWFDQVSAMPMDTYKGHGFRNDLFQMMVDLKPRFIRFPGGCFVEGDWLGNAFRWKETVRAWEERPGHYGDVWKYWTDDGLGHFEFFQLAEDLGASPIWVFNNGISHNDQVETKNVMPFVQEAIDGIEFARGDSNSTWGSVRAAMGHPEPFELKYVAVGNEDCFKSYYRGNYLEFYNAIKKAYPDIKIISNCDASAKPLDHPADYFDYHIYT 438          
BLAST of FC925093 vs. ExPASy Swiss-Prot
Match: ABF1_STRCX (Alpha-N-arabinofuranosidase 1 OS=Streptomyces chartreusis PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.875e-35
Identity = 87/235 (37.02%), Postives = 123/235 (52.34%), Query Frame = 3
Query:   12 WTRVETLLEAKETNPNARLQLTTSREGIIWFDQVSAMPLDTYKG--HGFRNDLFQMLANLKPRFVRFPGGCFVE-----------GEWLRNAFRWKASIGPWENRPGHFGDVWMYWTDDGLGYFEFLQLAEDLGALPIWVFN---NGISHTDEVDTSAVLP-FVQEALDGIEFARGDPNSTWGSVRAAMGHPDPFDLRYVAVGNEDCGKKNYRGNYLKFYDAIKRTYPDIGIISN 665
            W +      A  T+   RL +  +    +  D VS  P DTY+   +G R DL + +A L P FVRFPGGC V            G   + +++WK ++GP E R  +  + W Y    GLGY+E+ + +ED+GA+P+ V      G      VD  A+L   +Q+ LD IEFA G   S WG VRA MGHP PF L ++ VGNE+     +   + +F  AI+  YPDI ++SN
Sbjct:  179 WAKYRATFTATRTSNRGRLAVAANDAAAL--DMVSLFPRDTYRNQQNGLRKDLAEKIAALHPGFVRFPGGCLVNTGSMEDYSAASGWQRKRSYQWKDTVGPVEERATN-ANFWGYNQSYGLGYYEYFRFSEDIGAMPLPVVPALVTGCGQNKAVDDEALLKRHIQDTLDLIEFANGPATSKWGKVRAEMGHPRPFRLTHLEVGNEENLPDEFFDRFKQFRAAIEAEYPDITVVSN 410          
BLAST of FC925093 vs. ExPASy Swiss-Prot
Match: ABFA_ASPNG (Alpha-N-arabinofuranosidase A OS=Aspergillus niger GN=abfA PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.798e-28
Identity = 72/210 (34.29%), Postives = 116/210 (55.24%), Query Frame = 3
Query:  129 DTYKG--HGFRNDLFQMLANLKPRFVRFPGGCFVEGEWLRNAFRWKASIGPWENRPGHFGDVWMYWTDDGLGYFEFLQLAEDLGALPIWVFNNGISHTDEVDT----SAVLPFVQEALDGIEFARGDPNSTWGSVRAAMGHPDPFDLRYVAVGNEDC---GKKNYRGNYLKFYDAIKRTYPDIGII-----SNCDGSSSPLDHKADFYDF 716
            +TYK   +G +  L  +L ++K  F+RFPGG  +EG    N ++W  +IG   +RPG  G  W Y+  DGLG  E+    EDLG +P+    +G +     +T     A+ P++ + L+ +E+  GD ++T+G+ RAA G  +P++L  V +GNED    G ++Y   +  FYDAI   YPD+ +I     ++C   S P     D++D+
Sbjct:  215 ETYKSRENGLKPQLANVLDDMKGSFLRFPGGNNLEGNSAENRWKWNETIGDLCDRPGREG-TWTYYNTDGLGLHEYFYWCEDLGLVPVLGVWDGFALESGGNTPLTGDALTPYIDDVLNELEYILGDTSTTYGAWRAANGQEEPWNLTMVEIGNEDMLGGGCESYAERFTAFYDAIHAAYPDLILIASTSEADCLPESMPEGSWVDYHDY 423          
BLAST of FC925093 vs. ExPASy Swiss-Prot
Match: ABF2_BACOV (Alpha-N-arabinofuranosidase 2 OS=Bacteroides ovatus GN=asdII PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 64/230 (27.83%), Postives = 94/230 (40.87%), Query Frame = 3
Query:   90 GIIWFDQVSAMPLDTYKGHGFRNDLFQMLANLKPRFVRFPGGCFVEGEWLRNAFRWKASIGPWENRPGHFGDVWMYWTDD-GLGYFEFLQLAEDLGALPIWVFNNGISHTDEVDTSAVLPFVQEALDGIEFARGDPNSTWGSVRAAMGHPDPFDLRYVAVGNEDCG-----KKNYRGNYLKFYDAIKRTYPDIGIISNCDGSS-----------SPLDHKADFYDFHIYT 728
            G +W  + S +P       G+R D+F  L +L    +R+PGGCF +       + W   IGP ENRP    + W    +D   G  EFL L E LG  P +V  N  S T           V+E    +E+   D +S   ++R   G    + L+Y+ VGNE  G     +  Y  +  + Y    R Y    +     G+S           + + H+ D    H YT
Sbjct:   55 GGLWVGENSDIP----NIKGYRTDVFNALKDLSVPVLRWPGGCFAD------EYHWMDGIGPKENRPKMVNNNWGGTIEDNSFGTHEFLNLCEMLGCEP-YVSGNVGSGT-----------VEELAKWVEYMTSDGDSPMANLRRKNGRDKAWKLKYLGVGNESWGCGGSMRPEYYADLYRRYSTYCRNYDGNRLFKIASGASDYDYKWTDVLMNRVGHRMDGLSLHYYT 262          
The following BLAST results are available for this feature:
BLAST of FC925093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ASD1_ARATH6.935e-12077.37Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thali... [more]
ASD2_ARATH1.354e-11576.25Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thali... [more]
ABF1_STRCX6.875e-3537.02Alpha-N-arabinofuranosidase 1 OS=Streptomyces char... [more]
ABFA_ASPNG2.798e-2834.29Alpha-N-arabinofuranosidase A OS=Aspergillus niger... [more]
ABF2_BACOV8.737e-1427.83Alpha-N-arabinofuranosidase 2 OS=Bacteroides ovatu... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YC15FM1 TF Citrus clementina cDNA clone KN0AAP8YC15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925093 ID=FC925093; Name=FC925093; organism=Citrus clementina; type=EST; length=733bp
ATGTTTCAAACTGGACAAGGGTGGAAACTTTGTTGGAAGCCAAAGAAACA
AATCCTAATGCAAGACTTCAACTGACAACTTCAAGAGAAGGCATTATATG
GTTTGATCAAGTGTCAGCTATGCCTTTGGACACATACAAGGGACATGGTT
TTCGAAATGATCTCTTCCAAATGCTTGCAAATCTTAAACCTCGATTCGTC
AGATTTCCAGGTGGCTGTTTTGTTGAAGGTGAATGGTTAAGAAATGCATT
TCGCTGGAAAGCAAGCATTGGACCCTGGGAAAATAGACCTGGGCACTTTG
GTGATGTTTGGATGTATTGGACAGATGATGGCCTTGGTTATTTTGAGTTC
CTTCAACTAGCGGAAGACCTTGGTGCGCTGCCCATATGGGTATTTAACAA
TGGAATCAGCCATACTGATGAAGTCGATACTTCCGCTGTCTTACCTTTTG
TGCAAGAAGCCCTTGATGGTATTGAGTTTGCAAGAGGTGATCCAAACTCT
ACATGGGGTTCTGTACGAGCTGCAATGGGACATCCTGATCCTTTTGACTT
GAGATATGTTGCTGTTGGGAATGAAGATTGTGGGAAAAAGAATTACAGAG
GAAACTACCTCAAGTTCTATGATGCTATAAAACGTACCTACCCAGACATT
GGAATAATCTCAAACTGTGACGGATCTTCTAGTCCATTGGATCATAAAGC
TGATTTTTATGATTTTCATATTTATACATCTGC
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