FC925120

Overview
NameFC925120
Unique NameFC925120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length804
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14600 contig Ccv1_Contig14600:1..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC925120 vs. ExPASy Swiss-Prot
Match: CI023_MOUSE (Alba-like protein C9orf23 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.490e-12
Identity = 42/136 (30.88%), Postives = 66/136 (48.53%), Query Frame = 1 
Query:   61 MDRYQRV-------EKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTT--RHVSMITITLSKKELNRSSVGYQPP 441
            M++Y+R          P  + P D  E+R+    ++R+ +  A+  L+   +  +VF   GRA  K V+  E++KRR+ GLHQ T +      D+W            T  RHV  + + LS+  L+ S  GYQPP
Sbjct:    1 MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQPP 136
[Close]
BLAST of FC925120 vs. ExPASy Swiss-Prot
Match: CI023_HUMAN (Alba-like protein C9orf23 OS=Homo sapiens GN=C9orf23 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.395e-12
Identity = 38/120 (31.67%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:   88 PKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTT--RHVSMITITLSKKELNRSSVGYQPP 441
            P  + P D  E+R+    ++R+ +  A+  L+   +  +VF   GRA  K V+  E++KRR+ GLHQ T +      D+W            T  RHV  + + LS+  L+ +  GYQPP
Sbjct:   17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136
The following BLAST results are available for this feature:
BLAST of FC925120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CI023_MOUSE1.490e-1230.88Alba-like protein C9orf23 homolog OS=Mus musculus ... [more]
CI023_HUMAN7.395e-1231.67Alba-like protein C9orf23 OS=Homo sapiens GN=C9orf... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YD11FM1 TF Citrus clementina cDNA clone KN0AAP8YD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925120 ID=FC925120; Name=FC925120; organism=Citrus clementina; type=EST; length=804bp
GCATAAAAGAAGAAACGTAGCCGTAGAAGAGGGCGCTTTATCTTCAAAGA
GTGAAGAAAGATGGATCGGTACCAAAGAGTGGAGAAGCCAAAAGCAGAGA
CACCGATTGACGAGAATGAAATTCGGATTACGAGTCAAGGGAGGATGCGC
AGCTACATCACTTATGCTATGACTCTGCTTCAGGAAAGAGGTTCCAATGA
GATTGTATTCAAGGCAATGGGAAGGGCTATCAATAAGACTGTAACAATAG
TGGAGCTAATAAAAAGAAGAATTGTTGGCCTTCATCAGAATACAGTTATT
GGATCCACGGACATAACTGATACGTGGGAGCCTTTGGAGGAAGGGCTTCT
TCCGTTGGAAACCACAAGGCATGTGTCAATGATTACAATAACTCTTTCAA
AGAAGGAACTGAATAGGTCTTCTGTTGGGTATCAGCCTCCACTGCCTGCT
GAACAAGTTAAGCCATTGATAGAATTTGATTATGATGGAGAGGGTTCACC
TAATGGACCCCGTAGGGGTCGGAGTGGTAGAGGAAGGTCAAGAGGAAGAG
GTATTTTGTGCCACTATGGAATTTCCTGTTACACATGTGCTAGCACACAT
GGACATGACACATACAAGCTTTTATTCCATATGCATTGCATAGGATTCAT
TTTTCTTTTGTATTCTCTTCATTTCTTGCGTTCTTTTGCTTAAAGTAGAT
GGTATTCTACTTGAAGACACATCATCCCTAGTTGTTAAAGTGAGACCTGA
GAATGTTGTGATATACTAGGCTACTGCTTAAATGATCGGTTACAATGATA
ATTT
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