FC925121

Overview
NameFC925121
Unique NameFC925121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9782 contig Ccv1_Contig9782:392..1120. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RK4_ARATH (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=1 SV=2)

HSP 1 Score: 311.997 bits (798), Expect = 2.091e-84
Identity = 158/211 (74.88%), Postives = 180/211 (85.31%), Query Frame = 3
Query:   99 KPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXE-NTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPS 728
            KPL VSSQLA+ LPILSF GEK+GETYLDLK+A  DTARAVVHRA++TD+ NKRRGTASTLTRGEVRGGG KPYSQKKTG ARRGS RTPLRPGGGVVFGP+P+DWSIKIN+KEK+L            E   IVVEEF  KFE+PKTK+F+ AM+RWGLDPK+KA FL+++V ENV KSSRNIGTL+MLTPRTLNLFDIL+A+ LVLTP+
Sbjct:   43 KPLSVSSQLAT-LPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPA 252          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RK4_TOBAC (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.646e-79
Identity = 160/235 (68.09%), Postives = 184/235 (78.30%), Query Frame = 3
Query:   57 IQLAKPN-----SLINLPPKPLIVS------SQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPS 728
            I L+ PN      L+   PK L V+      S++A+ +PILSF G ++G T L+LKSA  DTARAVVHR L TD++N+RRGTASTLTR EVRGGG KPY QKKTGRARRGSNRTPLRPGGGVVFGPKP+DWS+KINKKEKRL            ENTIVVEEF+ KFE+PKTKEFI+ MRRWGLDPK+K+ FL+ +VS+NV  SSRNIGTLKMLTPRTLNLFDILD+E LVLT S
Sbjct:   12 IFLSNPNIQSSKHLLFRSPKQLSVAAIATIRSEVAT-IPILSFDGAEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRL--AISTALSSASENTIVVEEFNDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKLVLTKS 243          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RK4_SPIOL (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.040e-75
Identity = 146/224 (65.18%), Postives = 176/224 (78.57%), Query Frame = 3
Query:   51 KPIQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            KPI L  P+S  +     L + S+L  PLPIL+F+GEK+GET+L+LK+A P+ ARAVVHR LIT +QNKRRGTASTLTR EVRGGGRKPY QKKTGRARRGS  +PLRPGGGV+FGPKPRDW+IK+NKKE+RL             N+ VVEEF   FE+PKTK+FI AM+RWGLDP +K+ F +M++ ENVEKS RNI TLK+LTPR+LNLFD+L+AE LV T
Sbjct:   29 KPI-LKLPSSSHSQTSLSLSIKSELI-PLPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVG--NSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLNAEKLVFT 248          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_THEEB (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplD PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.301e-49
Identity = 98/194 (50.52%), Postives = 132/194 (68.04%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            +  + G   GE  LDL +A P+TA  +VHRAL+  + N R+GT ST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+S K+N+KE+RL            E+ IVV++F     RPKTKE + A++RWG++P+QK   L  +++E V  S+RN+ TLK+L    LN+FD+L A+ +V T
Sbjct:    6 VKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTALMSRVEDLIVVQDFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLLRADQLNVFDLLYADRIVAT 197          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_CYAP4 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplD PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.849e-48
Identity = 98/194 (50.52%), Postives = 131/194 (67.53%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            I  + G ++GET L+L+ A  + A  +VHRAL   M N R+GTAST TR EVRGGGRKP+ QK TGRAR GSNR+PL  GGGV+FGPKPRD+SIK+N KE+RL            ++ IVVE+F  K  RPKTKE   A+ RWG+ P  K   +V +  + +  S+RNI T+K++   +LN+FD+L+A+ +V T
Sbjct:    6 IKDWQGSEVGETALELRVAKAENAAHIVHRALRRQMANARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSIKMNYKERRL--ALRTALISRSDSLIVVEDFSDKLPRPKTKELAAAIARWGVQPNDKVLLIVADKQDTIYLSARNIATVKLIQATSLNVFDLLNADWIVAT 197          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_NOSP7 (50S ribosomal protein L4 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplD PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.380e-48
Identity = 96/198 (48.48%), Postives = 137/198 (69.19%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV--SENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPS 728
            + ++ GE++GET  +L+ A  +TA  +VHRAL+  + N R+G AST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+ +K+N+KE+RL            ++ IVVEEF  +  RPKTK+ + A+ RWG+ P+ KA  ++ E+  ++NV  S+RNI  LK++    LN+FD+L A+ +V+T S
Sbjct:    6 VKNWQGEQVGETTFELRVAKEETASHIVHRALVRQLTNARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKLNRKERRL--ALRTAFVGRIDDLIVVEEFSTELSRPKTKDLVAALARWGVVPESKALLILSEIADTDNVYLSARNIENLKLIAANQLNVFDLLHADKIVVTAS 201          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_CYAP8 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 8801) GN=rplD PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.555e-47
Identity = 93/194 (47.94%), Postives = 133/194 (68.56%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            I ++ GE++G+  L+LK A  + A  +VHRAL+    N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV FGPKP+D+++K+N+KE+RL            E+ IVVE F  +  +PKTKE + A+ RWG+D  QK   +V E+++N++ S+RN+  +K+L    LN++D+L A+ +V T
Sbjct:    6 IKNWQGEEVGQATLELKVAKEENAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVTFGPKPKDFNVKMNRKERRL--ALRTALDSRIEDLIVVENFAEQLTQPKTKELVSALTRWGIDGNQKVVLIVSEITDNIQLSARNVPYIKLLKADGLNVYDLLVADKIVAT 197          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_CYAP7 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7424) GN=rplD PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.949e-47
Identity = 93/194 (47.94%), Postives = 132/194 (68.04%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            + ++ G+++G+T L+LK A  +TA  ++HRA++  + N R+G AST TR EVRGGGRKP+ QK TGRAR GSNR+PL  GGGV+FGPKPRD+S K+N+KE+RL            EN I+VE F  +  +PKTKE   A+ RWG+  K K   ++ E+ EN+  S+RNI  +K++   ++N++DIL A  LV T
Sbjct:    6 VKNWQGDEVGQTSLELKVAKEETASHILHRAVVRHLANARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTALNSKAENLIIVENFAPELPQPKTKELALALTRWGVTEKDKVLLILSEIPENISLSARNICNVKLIRADSINVYDILSASKLVAT 197          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_ANASP (50S ribosomal protein L4 OS=Anabaena sp. (strain PCC 7120) GN=rplD PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.949e-47
Identity = 94/196 (47.96%), Postives = 131/196 (66.84%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPS 728
            + ++ GE+IG+   +L+ A   TA  +VHRAL+    N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+ +K+N+KE+RL            ++ I+VEEF  +  RPKTK+ + A  RWG +P+ K   ++ E  ENV  S+RNI  LK++    LN++D+L A+ +V+T S
Sbjct:    6 VKNWQGEQIGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRL--ALRTAFVSRIDDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLIAADQLNVYDLLHADKIVVTTS 199          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_ANAVT (50S ribosomal protein L4 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplD PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.769e-47
Identity = 93/196 (47.45%), Postives = 131/196 (66.84%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPS 728
            + ++ GE++G+   +L+ A   TA  +VHRAL+    N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+ +K+N+KE+RL            ++ I+VEEF  +  RPKTK+ + A  RWG +P+ K   ++ E  ENV  S+RNI  LK++    LN++D+L A+ +V+T S
Sbjct:    6 VKNWQGEQVGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRL--ALRTALVSRIDDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLIAADQLNVYDLLHADKIVVTTS 199          
The following BLAST results are available for this feature:
BLAST of FC925121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK4_ARATH2.091e-8474.8850S ribosomal protein L4, chloroplastic OS=Arabido... [more]
RK4_TOBAC2.646e-7968.0950S ribosomal protein L4, chloroplastic OS=Nicotia... [more]
RK4_SPIOL1.040e-7565.1850S ribosomal protein L4, chloroplastic OS=Spinaci... [more]
RL4_THEEB8.301e-4950.5250S ribosomal protein L4 OS=Thermosynechococcus el... [more]
RL4_CYAP41.849e-4850.5250S ribosomal protein L4 OS=Cyanothece sp. (strain... [more]
RL4_NOSP75.380e-4848.4850S ribosomal protein L4 OS=Nostoc punctiforme (st... [more]
RL4_CYAP84.555e-4747.9450S ribosomal protein L4 OS=Cyanothece sp. (strain... [more]
RL4_CYAP75.949e-4747.9450S ribosomal protein L4 OS=Cyanothece sp. (strain... [more]
RL4_ANASP5.949e-4747.9650S ribosomal protein L4 OS=Anabaena sp. (strain P... [more]
RL4_ANAVT7.769e-4747.4550S ribosomal protein L4 OS=Anabaena variabilis (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YD13FM1 TF Citrus clementina cDNA clone KN0AAP8YD13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925121 ID=FC925121; Name=FC925121; organism=Citrus clementina; type=EST; length=729bp
CATTTTTCTCCTCCACAATCTTCCTCACTTCATCTTCTAACAAAGTTCCA
AAGCCCATTCAACTCGCCAAGCCAAATTCCCTAATAAATCTCCCGCCAAA
GCCACTCATTGTCTCATCTCAACTCGCCTCTCCGCTCCCGATACTGTCCT
TCACAGGCGAAAAAATCGGCGAGACATACCTCGACCTAAAGTCCGCCGCA
CCCGACACAGCGCGTGCGGTTGTCCACCGGGCGTTGATCACCGACATGCA
GAACAAGCGACGCGGCACCGCGTCGACTCTCACGCGCGGGGAGGTAAGAG
GTGGGGGACGGAAACCCTACTCTCAAAAGAAAACGGGTAGGGCTCGTCGC
GGATCGAACAGGACCCCACTTCGGCCCGGAGGAGGCGTCGTTTTTGGACC
CAAGCCGAGGGACTGGTCGATTAAGATAAACAAGAAGGAGAAGCGGCTGG
CGATTTCGACGGCGATAGCGAGCGCCGCGGCGGCGGAGAACACGATTGTG
GTGGAGGAATTTGATGGGAAGTTTGAGAGGCCGAAGACGAAGGAGTTTAT
TGAGGCGATGAGGAGGTGGGGTTTGGACCCGAAGCAGAAAGCGACGTTCT
TGGTGATGGAGGTGAGCGAGAATGTGGAGAAATCGAGTAGGAATATTGGG
ACTTTGAAGATGTTGACGCCGAGGACATTGAATTTGTTTGATATTTTGGA
TGCGGAGACGCTGGTGTTGACGCCGTCAA
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