FC925122

Overview
NameFC925122
Unique NameFC925122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length799
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13595 contig Ccv1_Contig13595:210..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: 4CL2_SOYBN (4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 337.806 bits (865), Expect = 4.181e-92
Identity = 173/262 (66.03%), Postives = 200/262 (76.34%), Query Frame = 2
Query:   35 MISIATKKPELSLDISSAAPPAPSNEKIATHIFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTD-----KDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            MI++A        D +  + P  S      H+FKSKLPDIPISNHLPLH+YCFQ+  + +  PCLIVG   KT++YA+THLI  K AAGLSNLGI  GDV+MILLQN A+FVFSF+  SMIGAV TTANPFYT+ EI KQF  S AKLIIT + YVD+L   D     +DF V+T+D PPENCLHF+VLSEA+E  +PEV I PDD VA+PFSSGTTGLPKGV+LTHKSL TSVAQQVDGENPNLYLT  DV+LCVLPLFHI
Sbjct:    1 MITLAPSLDTPKTDQNQVSDPQTS------HVFKSKLPDIPISNHLPLHSYCFQNLSQFAHRPCLIVGPASKTFTYADTHLISSKIAAGLSNLGILKGDVVMILLQNSADFVFSFLAISMIGAVATTANPFYTAPEIFKQFTVSKAKLIITQAMYVDKLRNHDGAKLGEDFKVVTVDDPPENCLHFSVLSEANESDVPEVEIHPDDAVAMPFSSGTTGLPKGVILTHKSLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHI 256          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: 4CL3_ARATH (4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.392e-87
Identity = 174/269 (64.68%), Postives = 200/269 (74.35%), Query Frame = 2
Query:   35 MISIATKKPEL---------SLDISSAAPPAPSNEKIATHIFKSKLPDIPISNHLPLHTYCFQ--DRLSDDPCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKDFTVITIDAP-PENCLHFTVLSEADEDQ--IPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            MI+ A  +P++         S D+   +PP P        IF+SKLPDI I NHLPLHTYCF+    +SD PCLIVGSTGK+Y+Y ETHLICR+ A+GL  LGI+ GDVIMILLQN AEFVFSFMGASMIGAV+TTANPFYTS E+ KQ ++SGAKLIIT SQYVD+L    ++ T+IT D P PENCL F+ L   DE       V I  DD  ALPFSSGTTGLPKGVVLTHKSLITSVAQQVDG+NPNLYL + DV+LCVLPLFHI
Sbjct:    1 MITAALHEPQIHKPTDTSVVSDDVLPHSPPTP-------RIFRSKLPDIDIPNHLPLHTYCFEKLSSVSDKPCLIVGSTGKSYTYGETHLICRRVASGLYKLGIRKGDVIMILLQNSAEFVFSFMGASMIGAVSTTANPFYTSQELYKQLKSSGAKLIITHSQYVDKLKNLGENLTLITTDEPTPENCLPFSTLITDDETNPFQETVDIGGDDAAALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGDNPNLYLKSNDVILCVLPLFHI 262          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: 4CL2_ORYSJ (Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 4.488e-78
Identity = 155/273 (56.78%), Postives = 190/273 (69.60%), Query Frame = 2
Query:   35 MISIATKKPELSLDISSAAPPAPSNEKIATHIFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPK------------TDKDFTVITID---APPENCLHF-TVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            MI++A   PE    +++A   AP     A  +F+SKLPDI I +HLPLH YCF     L D PCLI  +TG+TY++AET L+CR+ AA L  LG+ +GD +M+LLQNC EF  +F  AS +GAVTT ANPF T  EI KQF+ SG KLI+T S YVD+L +             D   TVITID   A PE CL F  ++++ADE  +PEVAI PDDPVALPFSSGTTGLPKGVVLTH+S+++ VAQQVDGENPNL++  GDV LCVLPLFHI
Sbjct:    1 MITVAA--PEAQPQVAAAVDEAPPE---AVTVFRSKLPDIDIPSHLPLHEYCFARAAELPDAPCLIAAATGRTYTFAETRLLCRRAAAALHRLGVGHGDRVMVLLQNCVEFAVAFFAASFLGAVTTAANPFCTPQEIHKQFKASGVKLILTQSVYVDKLRQHEAFPRIDACTVGDDTLTVITIDDDEATPEGCLPFWDLIADADEGSVPEVAISPDDPVALPFSSGTTGLPKGVVLTHRSVVSGVAQQVDGENPNLHMGAGDVALCVLPLFHI 268          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: 4CL_PINTA (4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 6.480e-77
Identity = 142/233 (60.94%), Postives = 177/233 (75.97%), Query Frame = 2
Query:  113 KIATHIFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDK-DFTVITID-APPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            K   H+++SKLPDI IS+HLPLH+YCF+     +D PCLI G+T +TY ++E  LI RK AAGL+ LG++ G V+M+LL NC EF F FMGAS+ GA+ TTANPFY   EI KQ + +GA++I+T++ YV++L      D  VITID AP E C H +VL+EADE Q P V I PDD VALP+SSGTTGLPKGV+LTHK L++SVAQQVDGENPNLY  + DV+LCVLPLFHI
Sbjct:    6 KKVEHLYRSKLPDIEISDHLPLHSYCFERVAEFADRPCLIDGATDRTYCFSEVELISRKVAAGLAKLGLQQGQVVMLLLPNCIEFAFVFMGASVRGAIVTTANPFYKPGEIAKQAKAAGARIIVTLAAYVEKLADLQSHDVLVITIDDAPKEGCQHISVLTEADETQCPAVKIHPDDVVALPYSSGTTGLPKGVMLTHKGLVSSVAQQVDGENPNLYFHSDDVILCVLPLFHI 238          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.596e-75
Identity = 135/228 (59.21%), Postives = 180/228 (78.95%), Query Frame = 2
Query:  128 IFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPK--TDKDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            IF+SKLPDI I  HLPLHTYCF++  ++ D  CLI G+TG+T++Y++  L+ RK A+GL+ LGI+ GD IM+LL N  E+ F+F+GAS  GA++T ANPF+TSAE++KQ + S AKLIIT + YVD++     +K+  +I ID  P++CLHF+ L EADE ++PEV I  DD VALP+SSGTTGLPKGV+LTHK L+TSVAQQVDG+NPNLY+ + DV++C+LPLFHI
Sbjct:   12 IFRSKLPDIYIPKHLPLHTYCFENISKVGDKSCLINGATGETFTYSQVELLSRKVASGLNKLGIQQGDTIMLLLPNSPEYFFAFLGASYRGAISTMANPFFTSAEVIKQLKASQAKLIITQACYVDKVKDYAAEKNIQIICIDDAPQDCLHFSKLMEADESEMPEVVINSDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGDNPNLYMHSEDVMICILPLFHI 239          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.556e-75
Identity = 135/228 (59.21%), Postives = 180/228 (78.95%), Query Frame = 2
Query:  128 IFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPK--TDKDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            IF+SKLPDI I  HLPLHTYCF++  ++ D  CLI G+TG+T++Y++  L+ RK A+GL+ LGI+ GD IM+LL N  E+ F+F+GAS  GA++T ANPF+TSAE++KQ + S AKLIIT + YVD++     +K+  +I ID  P++CLHF+ L EADE ++PEV I  DD VALP+SSGTTGLPKGV+LTHK L+TSVAQQVDG+NPNLY+ + DV++C+LPLFHI
Sbjct:   12 IFRSKLPDIYIPKHLPLHTYCFENISKVGDKSCLINGATGETFTYSQVELLSRKVASGLNKLGIQQGDTIMLLLPNSPEYFFAFLGASYRGAISTMANPFFTSAEVIKQLKASLAKLIITQACYVDKVKDYAAEKNIQIICIDDAPQDCLHFSKLMEADESEMPEVVIDSDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGDNPNLYMHSEDVMICILPLFHI 239          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: 4CL1_TOBAC (4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.351e-74
Identity = 138/228 (60.53%), Postives = 175/228 (76.75%), Query Frame = 2
Query:  128 IFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPK--TDKDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            IF+SKLPDI I  HLPLH+YCF++    S  PCLI G+  + Y+YAE  L CRK A GL+ LGI+  D IMILL N  EFVF+FMGAS +GA++T ANP +T AE++KQ + S AK+IIT S +V ++    ++ D  VI ID+ PE CLHF+ L+++DE +IPEV I+PDD VALP+SSGTTGLPKGV+LTHK L+TSVAQQVDGEN NLY+ + DV++CVLPLFHI
Sbjct:   16 IFRSKLPDIYIPKHLPLHSYCFENISEFSSRPCLINGANDQIYTYAEVELTCRKVAVGLNKLGIQQKDTIMILLPNSPEFVFAFMGASYLGAISTMANPLFTPAEVVKQAKASSAKIIITQSCFVGKVKDYASENDVKVICIDSAPEGCLHFSELTQSDEHEIPEVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENANLYMHSEDVLMCVLPLFHI 243          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 7.414e-73
Identity = 136/228 (59.65%), Postives = 175/228 (76.75%), Query Frame = 2
Query:  128 IFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKT--DKDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            IF+SKLPDI I NHLPLH+YCF++    S  PCLI G+  + Y+YA+  L  RK AAGL   GI+  D IMILL N  EFVF+F+GAS +GA++T ANP +T AE++KQ + S AK+I+T + +V+++     + D  +I ID+ PE CLHF+VL++A+E  IPEV I+PDD VALP+SSGTTGLPKGV+LTHK L+TSVAQQVDGENPNLY+ + DV+LCVLPLFHI
Sbjct:   11 IFRSKLPDIYIPNHLPLHSYCFENISEFSSRPCLINGANKQIYTYADVELNSRKVAAGLHKQGIQPKDTIMILLPNSPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIIVTQACHVNKVKDYAFENDVKIICIDSAPEGCLHFSVLTQANEHDIPEVEIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYIHSEDVMLCVLPLFHI 238          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: 4CL2_ARATH (4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 6.277e-72
Identity = 139/232 (59.91%), Postives = 171/232 (73.71%), Query Frame = 2
Query:  128 IFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKDFTVITI---DAPPENCLHFTVLSEADE---DQIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            IF+S+LPDI I NHLPLH Y F++    +  PCLI G TG+ Y+YA+ H+  RK AAGL NLG+K  DV+MILL N  E V +F+ AS IGA+TT+ANPF+T AEI KQ + S AKLI+T S+YVD++     D  +I     DA PENCL F+ L++++E   D IPE  I P+D VALPFSSGTTGLPKGV+LTHK L+TSVAQQVDGENPNLY    DV+LCVLP+FHI
Sbjct:   22 IFRSRLPDIYIPNHLPLHDYIFENISEFAAKPCLINGPTGEVYTYADVHVTSRKLAAGLHNLGVKQHDVVMILLPNSPEVVLTFLAASFIGAITTSANPFFTPAEISKQAKASAAKLIVTQSRYVDKIKNLQNDGVLIVTTDSDAIPENCLRFSELTQSEEPRVDSIPE-KISPEDVVALPFSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFNRDDVILCVLPMFHI 252          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: 4CL2_SOLTU (4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 8.197e-72
Identity = 130/228 (57.02%), Postives = 172/228 (75.44%), Query Frame = 2
Query:  128 IFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPK--TDKDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            IF+SKLPDI I  HLPLH+YCF++    +  PCLI G+  + Y+YAE  L  RK A GL+ LGI+  D IMILL NC EFVF+F+GAS +GA++T ANP +T AE++KQ + S AK++IT + +  ++     + D  VI +D+ PE C+HF+ L ++DE +IP+V I+PDD VALP+SSGTTGLPKGV+LTHK L+TSVAQQVDGEN NLY+ + DV++CVLPLFHI
Sbjct:   14 IFRSKLPDIYIPKHLPLHSYCFENLSEFNSRPCLIDGANDRIYTYAEVELTSRKVAVGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIVITQACFAGKVKDYAIENDLKVICVDSAPEGCVHFSELIQSDEHEIPDVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENANLYMHSDDVLMCVLPLFHI 241          
The following BLAST results are available for this feature:
BLAST of FC925122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
4CL2_SOYBN4.181e-9266.034-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2[more]
4CL3_ARATH1.392e-8764.684-coumarate--CoA ligase 3 OS=Arabidopsis thaliana ... [more]
4CL2_ORYSJ4.488e-7856.78Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa... [more]
4CL_PINTA6.480e-7760.944-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2... [more]
4CL1_PETCR1.596e-7559.214-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL2_PETCR3.556e-7559.214-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL1_TOBAC1.351e-7460.534-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=... [more]
4CL2_TOBAC7.414e-7359.654-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=... [more]
4CL2_ARATH6.277e-7259.914-coumarate--CoA ligase 2 OS=Arabidopsis thaliana ... [more]
4CL2_SOLTU8.197e-7257.024-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC02FM1 TF Citrus clementina cDNA clone KN0AAP3YC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925122 ID=FC925122; Name=FC925122; organism=Citrus clementina; type=EST; length=799bp
AAAAAATTTCGACAAAACAAAAAAGGAACTGACGATGATATCAATAGCCA
CTAAAAAACCAGAGCTGTCTCTTGATATCTCTTCAGCAGCACCACCAGCG
CCGTCCAATGAAAAGATAGCCACCCATATTTTCAAATCAAAGCTTCCCGA
TATACCCATCTCCAATCATCTCCCTCTCCATACATATTGTTTCCAGGATC
GTTTATCTGACGATCCATGCTTAATCGTTGGCTCAACTGGCAAAACTTAC
TCTTATGCCGAAACGCACCTCATCTGTCGAAAAACCGCAGCCGGTTTGTC
GAATCTCGGCATCAAAAATGGCGACGTGATCATGATCCTCCTCCAGAACT
GCGCCGAATTCGTCTTCTCGTTCATGGGAGCTTCCATGATCGGTGCAGTC
ACGACGACGGCCAATCCCTTCTACACTTCAGCTGAAATCTTGAAACAGTT
CAGAACCTCTGGTGCCAAATTGATTATCACAATGTCTCAGTACGTCGACA
GGTTGCCGAAGACGGACAAAGATTTCACAGTGATCACGATCGATGCCCCT
CCGGAGAATTGCCTGCATTTCACAGTGTTATCGGAAGCAGATGAGGATCA
AATCCCAGAAGTTGCCATCAAGCCCGACGATCCTGTGGCGTTGCCTTTCT
CTTCGGGCACCACGGGATTGCCTAAAGGAGTGGTGCTGACGCACAAGAGC
TTGATCACCAGCGTGGCGCAGCAAGTGGATGGAGAGAACCCGAATCTTTA
CTTGACAAACGGAGACGTTGTGCTGTGCGTTTTACCTTTGTTTCACATT
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