FC925136

Overview
NameFC925136
Unique NameFC925136
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1947 contig Ccv1_Contig1947:2..525. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925136 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.192e-16
Identity = 39/109 (35.78%), Postives = 66/109 (60.55%), Query Frame = 2 
Query:   77 FQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILK 403
            F +G    R++++P+G +    HLS++L+V D+ N    WS +    L+VVNQ     S+ KE+Q++++    DWG+  F+ L+ L++   G+LV DTV+  AEV + K
Sbjct:   76 FVVGGYKWRILIFPKGNNVD--HLSMYLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRK 182
[Close]
BLAST of FC925136 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.825e-15
Identity = 39/109 (35.78%), Postives = 66/109 (60.55%), Query Frame = 2 
Query:   77 FQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILK 403
            F +G    R++++P+G +    HLS++L+V D+ +    WS +    L+VVNQ     +V KE+Q++++    DWG+  F+ L+ L+D   G+LV DTV+  AEV + K
Sbjct:   77 FVVGGYKWRILIFPKGNNVD--HLSMYLDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRK 183
The following BLAST results are available for this feature:
BLAST of FC925136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBP13_ARATH8.192e-1635.78Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
UBP12_ARATH1.825e-1535.78Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YC11FM1 TF Citrus clementina cDNA clone KN0AAP3YC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925136 ID=FC925136; Name=FC925136; organism=Citrus clementina; type=EST; length=524bp
GATTGAGAATTTCTTGAGGTTGAAGGATCTGTTGAAAAAGAGGAAGATTA
CGGGGCTTTGCATCAAGAGCAGGAGGTTTCAGATTGGGAATCGGGATTGT
CGTCTTATTGTATATCCCAGAGGGCAGTCTCAGCCACCATGTCACCTTTC
GGTGTTTCTTGAAGTTATGGATTCACGAAATACTTCTAGTGATTGGAGCT
GTTTTGTGAGTCATCGGTTGTCAGTTGTGAACCAAAAAATGGAGGAGAAA
TCTGTCACAAAGGAATCTCAAAATCGCTATTCTAAAGCTGCAAAGGATTG
GGGTTGGCGAGAATTTGTGACTCTTACCAGCCTATTTGATCAAGATTCTG
GGTTTCTTGTCCAAGACACGGTCGTGTTCTCGGCAGAGGTTCTCATCTTG
AAAGAGACGTCAATTATGCAGGATTTTACGGATCAGGACACTGAGTCAAC
CAATGCTGGTTCCCAAATGGACAAAGATTGGGAAAAGAAGTTCGTTTACT
TGGGAAGGTGGAGAACTTCTTGTC
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