FC925138

Overview
NameFC925138
Unique NameFC925138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1948 contig Ccv1_Contig1948:1..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 286.96 bits (733), Expect = 7.317e-77
Identity = 132/152 (86.84%), Postives = 143/152 (94.08%), Query Frame = 3
Query:  291 SKHAVDNPDEIA----SMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQFV 734
            ++HAV NPDE+A    ++ EMS RN TERRKLGYF+CGTGNPIDDCWRCD NWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDD+PVNP+PGTLRHAVIQD+PLWIVFKRDMVIQLKQELIVNSF+T+DGRGANVHIANGGCITIQFV
Sbjct:   41 NQHAVTNPDEVADEVLALTEMSVRNHTERRKLGYFTCGTGNPIDDCWRCDPNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDNPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFV 192          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.168e-74
Identity = 142/231 (61.47%), Postives = 175/231 (75.76%), Query Frame = 3
Query:  123 TQRGICLCFAVVLMLFVSVLASVRNEQDVSVSRKMKAE---SSMNSTMAAKAEVVAEALS-------------------KHAV-DNPD----EIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQFV 734
            +Q+ I +C AV+++L  ++ A +    ++S+SRK+K E   SS +STMAA  ++  E                      +HAV D+PD    E+A +V+MS +N T RRKLG+FSCGTGNPIDDCWRCD NWHKNRKRLADCGIGFGRNAIGGRDGRFY+VTDP D+D VNPKPGTLRHAVIQ++PLWIVFKRDMVI+LKQELI+NSF+T+D RG+NVHIANG CITIQF+
Sbjct:    5 SQKLISVCVAVLVVL--ALTAMIFRNSEISLSRKLKTEVIQSSNSSTMAAIRKLKTEEFQSLNSSTMAATRLDGEPQQQQHAVADDPDMVADEVAKLVQMSEQNRTARRKLGFFSCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYIVTDPTDEDVVNPKPGTLRHAVIQEEPLWIVFKRDMVIELKQELIMNSFKTIDARGSNVHIANGACITIQFI 233          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.209e-71
Identity = 122/151 (80.79%), Postives = 135/151 (89.40%), Query Frame = 3
Query:  282 EALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQFV 734
            E   +HAV+NPDE+A+MV+MS RNSTERR+LGYFSC TGNPIDDCWRCD  W   RKRLADC IGFGRNAIGGRDGRFYVVTDP DDDPVNP PGTLRHAVIQD+PLWI+FKRDMVI LKQELI+NSF+T+DGRG NVHIANG C+TIQ+V
Sbjct:   29 ETWHEHAVENPDEVAAMVDMSIRNSTERRRLGYFSCATGNPIDDCWRCDRKWQLRRKRLADCSIGFGRNAIGGRDGRFYVVTDPGDDDPVNPIPGTLRHAVIQDEPLWIIFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACLTIQYV 179          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL20_ARATH (Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.521e-69
Identity = 127/207 (61.35%), Postives = 151/207 (72.95%), Query Frame = 3
Query:  114 MAVTQRGICLCFAVVLMLFVSVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQFV 734
            MAVTQ  +    A++L +F + + S R+                            E   +HAV+NP+E+A+MV+MS RNST RR+LGYFSC TGNPIDDCWRCD  W   RK LA+C IGFGRNAIGGRDGR+YVV+DP DD+PVNPKPGTLRHAVIQ++PLWIVFKRDMVI LK+ELI+NSF+T+DGRG NVHIANG CITIQFV
Sbjct:    1 MAVTQILVVFASALLLSMFFTGVDSTRSN---------------------------ETWHEHAVENPEEVAAMVDMSIRNSTARRRLGYFSCSTGNPIDDCWRCDRRWQSRRKHLANCAIGFGRNAIGGRDGRYYVVSDPNDDNPVNPKPGTLRHAVIQEEPLWIVFKRDMVITLKEELIMNSFKTIDGRGVNVHIANGACITIQFV 180          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 2.521e-69
Identity = 125/207 (60.39%), Postives = 155/207 (74.88%), Query Frame = 3
Query:  114 MAVTQRGICLCFAVVLMLFVSVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQFV 734
            M +  R        +++L + + +S   ++    +  + + SS NS+ A K      A ++HAV NP+E+A+MV+M  +NSTERR+LG+FSC TGNPIDDCWRCD NWH  RKRLA+C IGFGRNAIGGRDGR+YVVTDP D D VNP+PGTLRHAVIQD+PLWIVFKRDMVI L QELI+NSF+T+DGRG NV IA G CITIQ+V
Sbjct:    1 MVIFSRSFLALSTTLIILALCINSSTMAQE----TEDLNSHSSSNSSTANKLPNDDGAWNEHAVKNPEEVAAMVDMKIKNSTERRRLGFFSCATGNPIDDCWRCDRNWHLRRKRLANCAIGFGRNAIGGRDGRYYVVTDPSDHDAVNPRPGTLRHAVIQDRPLWIVFKRDMVITLTQELIMNSFKTIDGRGVNVAIAGGACITIQYV 203          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.407e-66
Identity = 126/204 (61.76%), Postives = 156/204 (76.47%), Query Frame = 3
Query:  144 CFAVVLMLFVSVLASVRN--EQDVSVSRKMKAESSMN---STMAAKAEVVAEALSKHAVDNPD----EIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQ 728
            CF V+L +FV  + +  N    ++S SRK+K E S +   S M  + + V E L++HAV +PD    E+++++ MS +N T RRKLG+FSCG GN IDDCWRCD NW+KNRK LADCG+GFG  A GGR+G +YVVTD  DDD VNPKPGTLRHAVIQ +PLWI+FKRDMVI+LKQELI+NSF+T+D RGANVHIANG CITIQ
Sbjct:   12 CF-VLLFIFVGCVLTATNLRNNEISRSRKLKTEDSKSFNSSPMTTRLDGVVE-LNEHAVTDPDKVAHEVSNLIHMSEQNITARRKLGFFSCGNGNLIDDCWRCDRNWNKNRKHLADCGMGFGSKAFGGRNGSYYVVTDHSDDDVVNPKPGTLRHAVIQVEPLWIIFKRDMVIKLKQELIMNSFKTIDARGANVHIANGACITIQ 213          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.407e-66
Identity = 113/148 (76.35%), Postives = 131/148 (88.51%), Query Frame = 3
Query:  294 KHAVDNPDEIASMVEMSTRNSTERRKLGYFS-CGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQFV 734
            +HAV +P+EIA+MV+MS RNST RRKLG+FS C TGNPIDDCWRCD  WH+ RKRLADC IGFGRNA+GGRDGR+Y+VTDP D DPV PKPGTLR+AVIQD+PLWIVFKRDMVI L QELI+NSF+T+DGRG NVHIA G C+T+Q+V
Sbjct:   34 EHAVKDPEEIAAMVDMSIRNSTYRRKLGFFSSCSTGNPIDDCWRCDKKWHRRRKRLADCAIGFGRNAVGGRDGRYYIVTDPSDHDPVTPKPGTLRYAVIQDEPLWIVFKRDMVITLSQELIMNSFKTIDGRGVNVHIAGGACLTVQYV 181          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.934e-61
Identity = 105/144 (72.92%), Postives = 123/144 (85.42%), Query Frame = 3
Query:  303 VDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQFV 734
            V +P+ +   V      S  RRKLG+FSCG+GNPIDDCWRCD +W KNRKRLADCGIGFG+NAIGGRDG  YVVTDP +DDPVNP+PGTLR+AVIQD+PLWI+FKRDM IQLK+ELI+NSF+TLDGRGA+VHI+ G CITIQ+V
Sbjct:   50 VSDPELVVEEVHRKINESISRRKLGFFSCGSGNPIDDCWRCDKDWEKNRKRLADCGIGFGKNAIGGRDGEIYVVTDPGNDDPVNPRPGTLRYAVIQDEPLWIIFKRDMTIQLKEELIMNSFKTLDGRGASVHISGGPCITIQYV 193          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.447e-56
Identity = 99/145 (68.28%), Postives = 121/145 (83.45%), Query Frame = 3
Query:  303 VDNPDEIASMVEMSTRNSTE-RRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQFV 734
            V +P+ +   V  S   S   RRKLGY SC TGNPIDDCWRCD +W ++R+RLADC IGFG+NAIGGRDGR YVVTD  +D+PV+PKPGTLRHAV+QD+PLWI+F+RDM IQLK+ELI+NSF+T+DGRGA+VHI+ G CITIQ+V
Sbjct:   27 VPDPESVVEEVHKSINASVAGRRKLGYLSCTTGNPIDDCWRCDPHWEQHRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDNPVSPKPGTLRHAVVQDEPLWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHISGGPCITIQYV 171          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.196e-56
Identity = 100/140 (71.43%), Postives = 115/140 (82.14%), Query Frame = 3
Query:  312 PDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQF 731
            P  I + V  S   S  RR LGY SCGTGNPIDDCWRCD NW  NR+RLADC IGFG+NA+GGR+GR YVVTDP +DDPVNP PGTLR+AVIQD+PLWI+FKRDMVIQL+QEL++NS +T+DGRG NVHI NG CITI +
Sbjct:   26 PHAIVNEVHKSINAS--RRNLGYLSCGTGNPIDDCWRCDPNWANNRQRLADCAIGFGKNAMGGRNGRIYVVTDPGNDDPVNPVPGTLRYAVIQDEPLWIIFKRDMVIQLRQELVMNSHKTIDGRGVNVHIGNGPCITIHY 163          
The following BLAST results are available for this feature:
BLAST of FC925138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL1_ARATH7.317e-7786.84Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL15_ARATH1.168e-7461.47Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL8_ARATH1.209e-7180.79Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]
PEL20_ARATH2.521e-6961.35Probable pectate lyase 20 OS=Arabidopsis thaliana ... [more]
PEL10_ARATH2.521e-6960.39Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]
PEL9_ARATH3.407e-6661.76Probable pectate lyase 9 OS=Arabidopsis thaliana G... [more]
PEL14_ARATH3.407e-6676.35Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL22_ARATH1.934e-6172.92Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]
PEL18_ARATH2.447e-5668.28Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL_ZINEL3.196e-5671.43Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC12FM1 TF Citrus clementina cDNA clone KN0AAP3YC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925138 ID=FC925138; Name=FC925138; organism=Citrus clementina; type=EST; length=735bp
ATTCTTCTCTCTTTCTCTTTCCTTCTCTGCTGCTTTTTCTTTCTTCCTTT
CTTTTTTTTCTCGGTTGTGTTTGGGAAGTGGGAAAGAGAGAGAAAATCAA
AGAAAACAACGCAATGGCGGTGACGCAGCGTGGCATTTGTCTCTGTTTTG
CTGTCGTTTTAATGTTGTTCGTCAGCGTTCTGGCTTCTGTACGTAACGAG
CAAGACGTCTCTGTTTCCAGGAAGATGAAGGCAGAGAGCTCAATGAACTC
AACAATGGCGGCCAAGGCTGAAGTAGTAGCCGAGGCCTTGAGTAAACATG
CAGTTGATAACCCAGATGAAATTGCTTCAATGGTTGAGATGAGCACCCGC
AACAGCACTGAAAGGAGAAAGTTGGGGTACTTCTCCTGTGGTACTGGTAA
TCCCATTGATGACTGCTGGCGCTGTGACGGCAACTGGCACAAGAACCGCA
AGCGTCTTGCAGACTGTGGGATTGGTTTTGGAAGAAATGCCATTGGTGGC
CGTGATGGTCGCTTCTATGTTGTCACTGACCCAAGGGATGATGACCCTGT
TAACCCCAAACCTGGAACTTTACGCCATGCTGTTATCCAGGATAAGCCTC
TCTGGATTGTTTTCAAGAGGGACATGGTGATTCAATTGAAACAGGAACTG
ATTGTCAATAGCTTCCAGACCCTTGATGGTCGTGGGGCGAATGTGCACAT
TGCTAATGGAGGTTGCATCACTATCCAATTTGTGA
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