FC925143

Overview
NameFC925143
Unique NameFC925143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925143_ssr47 microsatellite FC925143_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14602 contig Ccv1_Contig14602:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.283e-47
Identity = 111/238 (46.64%), Postives = 139/238 (58.40%), Query Frame = 3
Query:   36 MAAGHHHHQDHEALTLERISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVAVK--KEETVSGGVGLGPLTPSSWTGFWDDGN----GIFSVPPLSPC 731
            MA+ H   Q+ +   L+ I+Q+LL D   +D++           AST        T+STLSQRKP    + +P  TT+            V  +  +RHYRGVRRRPWGKYAAEIRDPNKKG RVWLGTF+TA+EAA+ YD AAFK+RG KAILNFPLE G+     D  + +    KRK +  E+  + ++ K  K E         PLTPSSW GFWD  +    GIFSVP LSPC
Sbjct:    1 MASSHQQQQEQDQSALDLITQHLLTDFPSLDTF-----------ASTIHHC----TTSTLSQRKPPLATIAVP--TTA-----------PVVQENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKHEDLGDNKKTISLKAKRKRQVTEDESQLISRKAVKREEAQVQADACPLTPSSWKGFWDGADSKDMGIFSVPLLSPC 210          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.039e-46
Identity = 104/217 (47.93%), Postives = 134/217 (61.75%), Query Frame = 3
Query:   90 ISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEV-QQVDCGKKRKYE-ENEEFERKVAVKKEETVSGGVGLGPLTPSSWTGFW--DDGNGIFSVPPLSP 728
            IS +  N  T  DS+ F     +  P  +  +I       T  + +  S+N+ IP       + ++  + +EV    K +HYRGVR+RPWGK+AAEIRDPN+KGTRVWLGTF+TA+EAAKAYD AAFK+RG KAI+NFPLE+       +E+ Q  + G+KR  E ENEE   K  VK+EE V       PLTPSSW+  W  +DG GIF VPPLSP
Sbjct:   76 ISSFFNNSKTEFDSFEF-----ETKPNVSAARISSNSPKQTSFKERKPSLNIAIP------MKQQEVVQKVEVVPTEK-KHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLEVANFKQQDNEILQPANSGRKRMRETENEEIVIKKEVKREERVPAAA--APLTPSSWSAIWEGEDGKGIFEVPPLSP 278          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.048e-45
Identity = 112/236 (47.46%), Postives = 142/236 (60.17%), Query Frame = 3
Query:   69 EALTLERISQYLLNDLTPM--DSYSFISNLPQQNPASTDEQILVQ---KTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVA-VKKEE--------TVSGGVGLGPLTPSSWTGFWD--DGNGIFSVPPLSP 728
            EAL ++ ISQ+LL D   M  D  S  +N      + T  + +     K +STL+QRKP       P P  S+ R      + E     +ERHYRGVRRRPWGKYAAEIRDPNKKG R+WLGT++TAVEA +AYD AAF++RGRKAILNFPL++   S        +  GK+++ + +   E K A VK EE        T +    + PLTPSSW GFWD   G+GIFS+PPLSP
Sbjct:    6 EALAIDFISQHLLTDFVSMETDHPSLFTNQLHNFHSETGPRTITNQSPKPNSTLNQRKP-------PLPNLSVSRTVSTKTEKEE----EERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDVRVTSETCSGEGVIGLGKRKRDKGSPPEEEKAARVKVEEEESNTSETTEAEVEPVVPLTPSSWMGFWDVGAGDGIFSIPPLSP 230          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.167e-42
Identity = 97/216 (44.91%), Postives = 136/216 (62.96%), Query Frame = 3
Query:   90 ISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLD-SDEVQQVDCGKKRKYEENEEFERKVAVKKEETVSGGVGLGPLTPSSWTGFWD--DGNGIFSVPPLSP 728
            +S +  N  T  DS+ F   +P  + A +     +++TS    +RKPS +N+ IP     +       + +E+A   K +HYRGVR+RPWGK+AAEIRDPN+KGTRVWLGTF+TA+EAAKAYD AA+K+RG KAI+NFPLE+     + ++E++ +    +++  E    E+ V  K+ +     V   PLTPSSW+  WD  DG GIF VPPLSP
Sbjct:   72 VSTFFNNSKTEFDSFEF-GTIPNVSAARSSS---LKQTS--FKERKPS-LNIAIPVKQEVV-------QKVELAPTEK-KHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLEVANFKQEFNNEIRPLVNSSRKRVRETVNEEQLVINKEMKIEEERVPTAPLTPSSWSAIWDSGDGKGIFEVPPLSP 272          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.198e-31
Identity = 78/177 (44.07%), Postives = 112/177 (63.28%), Query Frame = 3
Query:  216 SQRKPSSINVRIPPPTTSIFRLKDEDKD--LEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEE---FERKVAVKKEETVSGGVGLGPLTPSSWTGFWD-DGNGIFSVPPLSP 728
            SQ +   + + +P  T  I    +  K    +   + +++HYRGVR+RPWGK+AAEIRDPNK+G+RVWLGTF+TA+EAA+AYD AAF++RG KAILNFPLE+G+    +DE +     KKRK +++E+    E+ +  ++   V+GG    P   S+ T   D D  G  + P LSP
Sbjct:  115 SQIRKPPLKISLPAKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKWKPRADEGE-----KKRKRDDDEKVTVVEKVLKTEQSVDVNGGETF-PFVTSNLTELCDWDLTGFLNFPLLSP 285          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.236e-30
Identity = 83/200 (41.50%), Postives = 113/200 (56.50%), Query Frame = 3
Query:   69 EALTLERISQYLLNDLTPMDSY--------SFISNL-------PQQNPAST--DEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKE----RHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEE-NEEFER 602
            E+  LE I  +LL DL   D +        SF+S L       P+Q P S   D    V +      +   SS      P   S     + D+ ++ A+ ++E    RHYRGVRRRPWGK+AAEIRDP KKG+R+WLGTF + V+AA+AYD AAFK+RGRKA+LNFPL+ G+    ++       G+KRK  + +EE +R
Sbjct:    6 ESSDLEAIQSHLLEDLLVCDGFMGDFDFDASFVSGLWCIEPHVPKQEPDSPVLDPDSFVNEFLQVEGESSSSS-----SPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPANS------GRKRKRSDVHEELQR 194          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.334e-28
Identity = 88/210 (41.90%), Postives = 119/210 (56.67%), Query Frame = 3
Query:  126 DSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSI---FRLKDEDKDLEV--ADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVAVKKEET--VSGG--VGLGPLTPSSWTGFWDDGNGIFSVPPLSP 728
            DS++F SN P+         + VQ      S RKP    ++I PP  +    F   +   +L V      ++RHYRGVR RPWGK+AAEIRDP ++GTRVWLGTF TA+EAA+AYD  AF++RG KAILNFPLE+ + +  +++ + +   +KR  EE E    +  +K EE+  VSGG  V  G      W     D     S+P LSP
Sbjct:   81 DSFTFQSNPPR---------VTVQ------SNRKPP---LKIAPPNRTKWIQFATGNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDKWNPRAEDGRGLYNKRKRDGEEEEVTVVEKVLKTEESYDVSGGENVESGLTAIDDW-----DLTEFLSMPLLSP 267          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.744e-26
Identity = 74/189 (39.15%), Postives = 103/189 (54.50%), Query Frame = 3
Query:   69 EALTLERISQYLLNDLTPMDSY---------SFISNL---------PQQNPAST--DEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRK 575
            E+  L+ I ++L  DL   D +         +F+S L         P+  P+S   D    VQ+     ++   SS     P   T   R K +  +       + RHYRGVRRRPWGK+AAEIRDP KKG+R+WLGTF + ++AA+AYD AAFK+RGRKA+LNFPL+ G+     +      C K+R+
Sbjct:    6 ESSDLDVIQKHLFEDLMIPDGFIEDFVFDDTAFVSGLWSLEPFNPVPKLEPSSPVLDPDSYVQEILQMEAESSSSSSTTTSPEVETVSNRKKTKRFE-------ETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKYDAPVN-----SCRKRRR 182          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.603e-24
Identity = 66/158 (41.77%), Postives = 93/158 (58.86%), Query Frame = 3
Query:  195 QKTSSTLSQRKPSSINVRIPPPTT-----SIFRLKDEDKDLEVA-DDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVAVKKEETVSGGVGL 650
            + +SS+  + + S  +V+I  P +     S+   K++   +  A    K +HYRGVR+RPWGK+AAEIRDP K G RVWLGTF TA +AA AYD AAF+MRG +A+LNFPL +     D   ++     K+  +  + E     A KK  TV+ G G+
Sbjct:   96 EPSSSSSDEDRSSFPSVKIETPESFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIK----SKRSSFSSSNE---NGAPKKRRTVAAGGGM 246          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.891e-24
Identity = 61/139 (43.88%), Postives = 87/139 (62.59%), Query Frame = 3
Query:  279 LKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGK------KRKYEENEEFERKVAVKKEETVSGGVGLGPLTPSSWT 677
            +K+E K+  VA + +E+ YRGVR+RPWGK+AAEIRD  +KG RVWLGTF+TA  AA AYD AAF ++G  A+LNFP ++ E SL   E   ++ G+      KRK+        +   KK+ + S  +   P + SS++
Sbjct:   64 IKEEGKEATVAAEEEEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADVVEESLRKMENVNLNDGESPVIALKRKH----SMRNRPRGKKKSSSSSTLTSSPSSSSSYS 198          
The following BLAST results are available for this feature:
BLAST of FC925143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
EF105_ARATH1.283e-4746.64Ethylene-responsive transcription factor ERF105 OS... [more]
ERF5_TOBAC7.039e-4647.93Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF104_ARATH2.048e-4547.46Ethylene-responsive transcription factor ERF104 OS... [more]
ERF5_NICSY6.167e-4244.91Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF102_ARATH2.198e-3144.07Ethylene-responsive transcription factor 5 OS=Arab... [more]
EF106_ARATH9.236e-3041.50Ethylene-responsive transcription factor ERF106 OS... [more]
EF103_ARATH1.334e-2841.90Ethylene-responsive transcription factor 6 OS=Arab... [more]
EF107_ARATH4.744e-2639.15Ethylene-responsive transcription factor ERF107 OS... [more]
EF100_ARATH2.603e-2441.77Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF94_ARATH9.891e-2443.88Ethylene-responsive transcription factor ERF094 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC17FM1 TF Citrus clementina cDNA clone KN0AAP3YC17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925143 ID=FC925143; Name=FC925143; organism=Citrus clementina; type=EST; length=757bp
TGTTTACTCAAATTTTACAACTAATATTTTTTGAAATGGCAGCTGGTCAT
CATCATCACCAAGATCATGAAGCTTTAACCTTAGAGCGCATAAGCCAGTA
CCTCCTCAATGACTTAACACCGATGGATAGCTATAGCTTCATCTCCAACC
TCCCGCAGCAAAACCCTGCTTCCACTGATGAACAAATTTTAGTACAAAAG
ACATCAAGCACTCTAAGTCAACGCAAGCCTTCTTCTATAAACGTAAGAAT
ACCTCCTCCAACTACTAGCATCTTCAGGTTGAAAGATGAAGATAAAGATT
TGGAGGTTGCTGACGATTACAAGGAAAGGCATTACAGGGGAGTGAGGAGA
CGGCCGTGGGGAAAATATGCAGCTGAAATTCGTGACCCGAATAAAAAGGG
GACCCGGGTTTGGCTTGGAACATTTAATACTGCCGTTGAAGCTGCGAAAG
CTTATGACAACGCTGCCTTTAAGATGCGTGGAAGAAAAGCCATACTGAAT
TTTCCTCTTGAAATTGGTGAGATCAGTTTGGACTCTGATGAAGTGCAGCA
AGTTGATTGTGGGAAAAAGAGGAAATATGAGGAAAACGAGGAGTTTGAGA
GAAAAGTGGCCGTGAAGAAGGAGGAAACGGTGAGTGGTGGTGTTGGACTA
GGCCCTTTGACGCCGTCAAGTTGGACCGGGTTTTGGGATGATGGAAATGG
GATATTTAGTGTGCCGCCGTTATCTCCTTGCTTTGGCCAGTTGGGCGTTT
GCTAAAT
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