FC925144

Overview
NameFC925144
Unique NameFC925144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length223
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925144_ssr202 microsatellite FC925144_ssr202:202..213. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1950 contig Ccv1_Contig1950:1..223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925144 vs. ExPASy Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.390e-12
Identity = 34/48 (70.83%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    2 NANPLADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 145
            N +P  +DL++IL SVGA+ADD++IE LLS+VKGKDITELIASGRE+L
Sbjct:   15 NTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRERL 62          
BLAST of FC925144 vs. ExPASy Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.284e-12
Identity = 32/48 (66.67%), Postives = 44/48 (91.67%), Query Frame = 2
Query:    2 NANPLADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 145
            N +P ADD+++IL SVGAEAD+E++EFLL+E+K KDITE+IA+GRE+L
Sbjct:   15 NTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRERL 62          
BLAST of FC925144 vs. ExPASy Swiss-Prot
Match: RLA24_ARATH (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.012e-12
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 NANPLADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 145
            NANP AD++++I+G+VGA+ D E IE LL EV GKDI ELIASGREKL
Sbjct:   15 NANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKL 62          
BLAST of FC925144 vs. ExPASy Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.629e-11
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    5 ANPLADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 145
            A+P   D+++ILGSVGAE +D +IE LL EVKGKD+ ELIA+GREKL
Sbjct:   16 ASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          
BLAST of FC925144 vs. ExPASy Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 9.964e-11
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    2 NANPLADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREK 142
            NA+P ADDL  IL SVG E D+E++E LLS++ GKDITELIA+GREK
Sbjct:   15 NASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGREK 61          
BLAST of FC925144 vs. ExPASy Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.964e-11
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    5 ANPLADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 145
            A+P + D++ ILGSVGAE +D +IE LL EVKGKD+ ELIA+GREKL
Sbjct:   16 ASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          
The following BLAST results are available for this feature:
BLAST of FC925144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RLA2_PARAR1.390e-1270.8360S acidic ribosomal protein P2 OS=Parthenium arge... [more]
RLA2B_MAIZE5.284e-1266.6760S acidic ribosomal protein P2B OS=Zea mays GN=RP... [more]
RLA24_ARATH9.012e-1268.7560S acidic ribosomal protein P2-4 OS=Arabidopsis t... [more]
RLA21_ARATH7.629e-1165.9660S acidic ribosomal protein P2-1 OS=Arabidopsis t... [more]
RLA2A_MAIZE9.964e-1168.0960S acidic ribosomal protein P2A OS=Zea mays GN=RP... [more]
RLA22_ARATH9.964e-1165.9660S acidic ribosomal protein P2-2 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YC18FM1 TF Citrus clementina cDNA clone KN0AAP3YC18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925144 ID=FC925144; Name=FC925144; organism=Citrus clementina; type=EST; length=223bp
CAACGCCAACCCCTTGGCGGATGACTTGCAGAACATTCTTGGATCAGTTG
GAGCTGAAGCTGATGATGAGAGAATAGAGTTTCTCTTATCAGAAGTCAAG
GGCAAGGATATTACCGAGCTAATTGCATCCGGAAGGGAGAAGTTGGCATC
AGTGCCATCAGGTGGTGGTGTTGCTGTTGCTGCAGCAGCACCTGCTGCAG
GTGCTGCTGCTGCTCCTGCTGCT
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