FC925246

Overview
NameFC925246
Unique NameFC925246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14297 contig Ccv1_Contig14297:7..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925246 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.413e-17
Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  226 HMDPSTMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDF 525
            H DP+  +FF  KDL  G+TM ++F     +A  + LPR EAD++PFS +++P +L  FS    S  A  M  TL  CE PP +GE K CATSLESM DF
Sbjct:  205 HDDPNVALFFLEKDLHPGKTMAVHFTAT--TAGEKFLPRSEADAMPFSSEKVPEILSRFSVKPGSVEAAEMAQTLRDCEAPPAQGERKACATSLESMVDF 302          
BLAST of FC925246 vs. ExPASy Swiss-Prot
Match: RAF1B_WHEAT (Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.494e-14
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  238 STMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFVHGTFRLETKFQVLST 573
            +T VFF  + +++G  +P +F    P+A    LPR+ ADS+PF+   LP +L  F  + DS    +ME TL  CE P I GE+K CATSLE++ +   G         V ST
Sbjct:  138 TTTVFFHEEAVRVGRRLPFHFPPATPAALG-FLPRQVADSVPFTTAALPGILATFGIASDSTTVPSMEATLRACESPTIAGESKFCATSLEALVERAMGVLGTRDIRPVTST 248          
BLAST of FC925246 vs. ExPASy Swiss-Prot
Match: BURPH_ORYSJ (BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  232 DPSTMVFFTLKDLKIGETM--PIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFVHGTF 540
            DP   +FF  K+L+ G+ +   ++F     +   + LPR +ADS+PFS K+LP +L  F     S  A  M  TL  CE+P  +GE K CATSLES+ DFV  +F
Sbjct:  357 DPDMALFFLEKNLQQGKKINNALHFANLLATTNSKFLPRGKADSIPFSSKELPEILDRFGVRPGSDDAAEMSATLQDCELPANKGEKKACATSLESIVDFVTSSF 461          
BLAST of FC925246 vs. ExPASy Swiss-Prot
Match: RAF1A_WHEAT (Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.238e-13
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 1
Query:  238 STMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFVHGTFRLETKFQVLSTK 576
            +T VFF  + +++G+ +P  F    P+A    LPR+ ADS+PF+   LP +L  F  + DS    +ME TL  CE P I GE+K CATSLE++         +E   +VL T+
Sbjct:  165 TTTVFFHEEAVRVGKRLPFRFPPATPAALG-FLPRQVADSVPFTTAALPGVLATFGVASDSATVASMEATLRACESPTIAGESKFCATSLEAL---------VERAMEVLGTR 267          
BLAST of FC925246 vs. ExPASy Swiss-Prot
Match: BURP6_ORYSJ (BURP domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=BURP6 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.238e-13
Identity = 45/98 (45.92%), Postives = 54/98 (55.10%), Query Frame = 1
Query:  232 DPSTMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDF 525
            D    VFF  KDL  G  M ++F +    A    LPR  ADS+PF+ ++LP +L   S    SP A AM  TL  CE  P  GE K CATSLESM +F
Sbjct:   22 DTVNNVFFLEKDLFPGSKMTLHFTRATAGA--ALLPRGRADSVPFASEKLPEILSQLSVPAGSPAADAMRSTLAECEAAPQAGEAKRCATSLESMVEF 117          
BLAST of FC925246 vs. ExPASy Swiss-Prot
Match: BURPD_ORYSJ (BURP domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=BURP13 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.601e-13
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  238 STMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESM 516
            +T VFF  + +++GE +P YF     SA    LPR  ADS+PF+   LP +L  F  + D+  A  M  TL  CE P + GE+K CATSLE++
Sbjct:  186 TTTVFFHEEAVRVGERLPFYFPAATTSALG-FLPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRETLRTCEWPTLAGESKFCATSLEAL 277          
BLAST of FC925246 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  226 HMDPSTMVFFTLKDLKIGETMPIYFRKRDPSAYPQA-LPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDF 525
            H DP+  +FF  KDL  G+ M + F   D      A LPR EA+++PF  ++    L+ FS    S  A+ M+ T+  CE   + GE K CATSLESM DF
Sbjct:  168 HDDPNAALFFLEKDLVRGKEMNVRFNAEDGYGGKTAFLPRGEAETVPFGSEKFSETLKRFSVEAGSEEAEMMKKTIEECEARKVSGEEKYCATSLESMVDF 268          
BLAST of FC925246 vs. ExPASy Swiss-Prot
Match: BURP5_ORYSJ (BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  232 DPSTMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFV 528
            DP+  +FF   +L+  +++ ++F      A  + LPR EAD++PFS K L  +L  F     S  A  ++ TL  CE+P  +GE K CATSLESM DFV
Sbjct:  103 DPTMGLFFLETNLQSSKSIKLHFANM--MAGTKFLPRGEADAVPFSSKDLQEILARFGVRPGSVDASVVKNTLLECELPANKGEKKACATSLESMVDFV 199          
BLAST of FC925246 vs. ExPASy Swiss-Prot
Match: BURP1_ORYSJ (BURP domain-containing protein 1 OS=Oryza sativa subsp. japonica GN=BURP1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 43/98 (43.88%), Postives = 54/98 (55.10%), Query Frame = 1
Query:  247 VFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGET----KICATSLESMPDFV 528
            VFF  KDL  G  M ++F +    A    LPR  A+S+PF+ ++LP +L   S    SP A AM  TL  CE   + GET      CATSLESM +FV
Sbjct:   64 VFFLEKDLFPGSKMTLHFTRATAGA--ALLPRGRAESVPFASERLPEILSQLSIPAVSPTADAMWSTLAECEAARLAGETTKHKHYCATSLESMVEFV 159          
The following BLAST results are available for this feature:
BLAST of FC925246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
BURP3_ORYSJ1.413e-1748.00BURP domain-containing protein 3 OS=Oryza sativa s... [more]
RAF1B_WHEAT2.494e-1439.29Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B... [more]
BURPH_ORYSJ5.556e-1441.90BURP domain-containing protein 17 OS=Oryza sativa ... [more]
RAF1A_WHEAT1.238e-1338.94Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A... [more]
BURP6_ORYSJ1.238e-1345.92BURP domain-containing protein 6 OS=Oryza sativa s... [more]
BURPD_ORYSJ3.601e-1343.01BURP domain-containing protein 13 OS=Oryza sativa ... [more]
RD22_ARATH1.048e-1241.58Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
BURP5_ORYSJ8.869e-1241.41BURP domain-containing protein 5 OS=Oryza sativa s... [more]
BURP1_ORYSJ5.749e-1143.88BURP domain-containing protein 1 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YB02FM1 TF Citrus clementina cDNA clone KN0AAP11YB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925246 ID=FC925246; Name=FC925246; organism=Citrus clementina; type=EST; length=578bp
CATATACAGTCCCTTAATCCCCTCCCCTTCTGCTTCACTTGTTATCTGTG
TTTCCTCCCCCTGAAAAAAAAAAGATTACTAAAATACCTAACAAACTTCC
ATAATAGAAAAGAGATGGGGTTACGATTTTCAGCTTGGAACCCCCTTCTT
TCCCTACTCCTTCTGTGTGCTCCGGTGCTTTCGGAGAATCTTCATGATTC
TCATTCCATACCATCCCACATGAATCACATGGACCCTTCAACGATGGTGT
TCTTCACCTTGAAGGATCTAAAGATTGGCGAAACGATGCCGATTTATTTT
CGCAAGAGAGATCCTTCAGCTTATCCTCAGGCTTTGCCTAGAGAAGAAGC
AGATTCCCTTCCATTTTCATTGAAACAACTGCCTTACCTTCTTCAATTCT
TCTCGTTCTCAGATGACTCACCCCTAGCCAAAGCCATGGAAGGGACCCTG
AATCATTGCGAAGTTCCCCCCATCGAAGGAGAAACCAAAATTTGTGCTAC
CTCTTTGGAATCCATGCCTGATTTTGTACACGGAACTTTCCGATTGGAGA
CCAAATTCCAAGTTCTAAGCACAAAATT
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