FC925248

Overview
NameFC925248
Unique NameFC925248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length179
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14184 contig Ccv1_Contig14184:328..506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925248 vs. ExPASy Swiss-Prot
Match: E13L3_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.713e-21
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 3
Query:    3 WCVCKDGVGDPVLQKALDYACGAGADCNPIPSNGPCYNPHTVKAHCSYAVNSYFQRKGQ 179
            WCVCK G+ D VLQK LDYACG GADCNP    G C+NP  V+AHC+YAVNS+FQ+KGQ
Sbjct:   21 WCVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVRAHCNYAVNSFFQKKGQ 79          
BLAST of FC925248 vs. ExPASy Swiss-Prot
Match: E13L2_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.944e-19
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 3
Query:    3 WCVCKDGVGDPVLQKALDYACGAGADCNPIPSNGPCYNPHTVKAHCSYAVNSYFQRKGQ 179
            WCVCK G+ D VLQ  LDYACG GADCNP      C+NP  V++HC+YAVNS+FQ+KGQ
Sbjct:   21 WCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKGQ 79          
BLAST of FC925248 vs. ExPASy Swiss-Prot
Match: E13L4_ARATH (Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 3
Query:    3 WCVCKDGVGDPVLQKALDYACGAGADCNPIPSNGPCYNPHTVKAHCSYAVNSYFQRK 173
            +C+CK+G  + VLQKA+DYACG GADC  I   G CY P+TVK HC  AVNSY+Q+K
Sbjct:   21 YCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQPNTVKNHCDVAVNSYYQKK 76          
BLAST of FC925248 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 3
Query:    3 WCVCKDGVGDPVLQKALDYACGAGADCNPIPSNGPCYNPHTVKAHCSYAVNSYFQRKG 176
            WCV KDG     LQ  ++YACG   DC PI S G C++P++++AH SY +N+Y+Q  G
Sbjct:  377 WCVAKDGANGTDLQNNINYACGF-VDCKPIQSGGACFSPNSLQAHASYVMNAYYQANG 433          
BLAST of FC925248 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.669e-11
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 3
Query:    3 WCVCKDGVGDPVLQKALDYACGAGADCNPIPSNGPCYNPHTVKAHCSYAVNSYFQR 170
            WCV K G  +  LQ +LD+ACG G DC  I   G C+ P+ V +H +YA+N YFQ+
Sbjct:  364 WCVPKKGATNEELQASLDWACGHGIDCGAIQPGGACFEPNNVVSHAAYAMNMYFQK 419          
The following BLAST results are available for this feature:
BLAST of FC925248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
E13L3_ARATH2.713e-2169.49Glucan endo-1,3-beta-glucosidase-like protein 3 OS... [more]
E13L2_ARATH1.944e-1964.41Glucan endo-1,3-beta-glucosidase-like protein 2 OS... [more]
E13L4_ARATH1.304e-1561.40Glucan endo-1,3-beta-glucosidase-like protein At1g... [more]
E13B_WHEAT8.746e-1248.28Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E137_ARATH5.669e-1148.21Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YB03FM1 TF Citrus clementina cDNA clone KN0AAP11YB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925248 ID=FC925248; Name=FC925248; organism=Citrus clementina; type=EST; length=179bp
ACTGGTGTGTTTGCAAAGATGGAGTGGGTGACCCAGTTTTACAAAAAGCT
TTGGACTATGCTTGTGGAGCTGGGGCTGATTGTAACCCTATCCCTTCCAA
TGGGCCTTGTTACAACCCCCACACTGTCAAAGCTCACTGCAGTTATGCTG
TCAACAGCTATTTCCAGAGAAAGGGTCAA
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