FC925253

Overview
NameFC925253
Unique NameFC925253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length328
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3787 contig Ccv1_Contig3787:2..329. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925253 vs. ExPASy Swiss-Prot
Match: RPB9_DROME (DNA-directed RNA polymerase II subunit RPB9 OS=Drosophila melanogaster GN=RpII15 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.519e-11
Identity = 33/55 (60.00%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 DVAAVSTLPRTKAVRCVKCQHGEAVFFQA-TSRGEEGMTLFFVCCNPNCGHRWRE 162
            DV +  TLPRT+   C KC H EAVFFQA T R EE M L++VC N NC HRW E
Sbjct:   75 DVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
[Close]
BLAST of FC925253 vs. ExPASy Swiss-Prot
Match: RPB9_PIG (DNA-directed RNA polymerase II subunit RPB9 OS=Sus scrofa GN=POLR2I PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.541e-11
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 DVAAVSTLPRTKAVRCVKCQHGEAVFFQA-TSRGEEGMTLFFVCCNPNCGHRWRE 162
            DV+   TLPRT+   C KC H EAVFFQ+ ++R E+ M L++VC  P+CGHRW E
Sbjct:   71 DVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
[Close]
BLAST of FC925253 vs. ExPASy Swiss-Prot
Match: RPB9_MOUSE (DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus GN=Polr2i PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.541e-11
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 DVAAVSTLPRTKAVRCVKCQHGEAVFFQA-TSRGEEGMTLFFVCCNPNCGHRWRE 162
            DV+   TLPRT+   C KC H EAVFFQ+ ++R E+ M L++VC  P+CGHRW E
Sbjct:   71 DVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
[Close]
BLAST of FC925253 vs. ExPASy Swiss-Prot
Match: RPB9_HUMAN (DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens GN=POLR2I PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.541e-11
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 DVAAVSTLPRTKAVRCVKCQHGEAVFFQA-TSRGEEGMTLFFVCCNPNCGHRWRE 162
            DV+   TLPRT+   C KC H EAVFFQ+ ++R E+ M L++VC  P+CGHRW E
Sbjct:   71 DVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
[Close]
BLAST of FC925253 vs. ExPASy Swiss-Prot
Match: RPB9_BOVIN (DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.541e-11
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 DVAAVSTLPRTKAVRCVKCQHGEAVFFQA-TSRGEEGMTLFFVCCNPNCGHRWRE 162
            DV+   TLPRT+   C KC H EAVFFQ+ ++R E+ M L++VC  P+CGHRW E
Sbjct:   71 DVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
The following BLAST results are available for this feature:
BLAST of FC925253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPB9_DROME1.519e-1160.00DNA-directed RNA polymerase II subunit RPB9 OS=Dro... [more]
RPB9_PIG7.541e-1154.55DNA-directed RNA polymerase II subunit RPB9 OS=Sus... [more]
RPB9_MOUSE7.541e-1154.55DNA-directed RNA polymerase II subunit RPB9 OS=Mus... [more]
RPB9_HUMAN7.541e-1154.55DNA-directed RNA polymerase II subunit RPB9 OS=Hom... [more]
RPB9_BOVIN7.541e-1154.55DNA-directed RNA polymerase II subunit RPB9 OS=Bos... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YG07FM1 TF Citrus clementina cDNA clone KN0AAP8YG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925253 ID=FC925253; Name=FC925253; organism=Citrus clementina; type=EST; length=328bp
GATGTGGCTGCGGTTTCAACTCTTCCTCGAACTAAAGCTGTTCGTTGTGT
CAAATGCCAGCATGGTGAAGCCGTGTTTTTCCAGGCAACTTCTAGAGGGG
AGGAGGGTATGACGCTGTTCTTTGTCTGCTGTAACCCTAACTGCGGCCAC
CGTTGGAGAGAATAAGGTTTAATTGCTCCCATTCCAGACTTACATTAATG
GATGCGTTGTGTAACAGTTAATGAATCCATTTACTTTAAGATTAGATTTC
CATGAACTCTCTCTCCCCCCTCAGTTGTTACCAATGGTTCAATTACCAGT
GTTATTTCAGTAACCTCTCCCGCTCCTG
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