FC925260

Overview
NameFC925260
Unique NameFC925260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1402 contig Ccv1_Contig1402:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC925260 vs. ExPASy Swiss-Prot
Match: Y205_BACP2 (UPF0176 protein BPUM_0205 OS=Bacillus pumilus (strain SAFR-032) GN=BPUM_0205 PE=3 SV=1)

HSP 1 Score: 45.4394 bits (106), Expect = 2.043e-11
Identity = 36/124 (29.03%), Postives = 56/124 (45.16%), Query Frame = 2 
Query:  269 VGGKLSSLESHIDAVKSISLFEGTDFKLASSDYPLSDKVAHECGFTSLSIRIVKELVTFSSHPLLNPPDVSNAGRHLSAVEFHSILQSTGQVLDKENATDDKKLVLLDARNLYETRIGKFRTPV 640
            V G +   + +++A+K    F     K+  +D        H   F  + +R   ELV  S    +NP +++  G+HLS VEF+  +QS                V++DARN YE  +G FR  V
Sbjct:   50 VSGTIEQTDKYMEALKEDPRFASMPIKIDEAD-------GH--AFKKMHVRHRNELVNLSLEDDVNPLELT--GKHLSPVEFYEQMQS-------------PDTVVIDARNDYEFDVGHFRGAV 149

HSP 2 Score: 42.3578 bits (98), Expect = 2.043e-11
Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 3 
Query:   24 QEQYGVLLYYKYSTIPDLNSLFPFYESNCSSLGLLGRVRLPPHGVHVTVT 173
            ++QY VLLYY+Y  I D  +    + + C  LGLLGR+ +   G++ TV+
Sbjct:    2 EKQYRVLLYYQYVPIEDPETFTAEHLAFCKELGLLGRILISSEGINGTVS 51
The following BLAST results are available for this feature:
BLAST of FC925260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y205_BACP22.043e-1129.03UPF0176 protein BPUM_0205 OS=Bacillus pumilus (str... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YB10FM1 TF Citrus clementina cDNA clone KN0AAP11YB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925260 ID=FC925260; Name=FC925260; organism=Citrus clementina; type=EST; length=677bp
CAATGTCTGGTGCTAACCAGAGTCAAGAACAATACGGTGTATTACTTTAC
TACAAATACTCCACGATTCCCGATCTCAACTCACTCTTCCCCTTCTATGA
GTCCAACTGCAGCTCACTCGGTCTCCTCGGTCGAGTCCGACTCCCTCCCC
ACGGCGTCCACGTCACTGTAACATACCCTTTTCACCGTTTCAGTAATTCA
TGATAAAAATCATTGCTTTATTGTTTCTGGGCATGTGGGTTGCGTTTTGA
TTTCTGGGTTTTGACCAGGTTGGTGGAAAGTTGTCATCCTTGGAGTCCCA
CATTGATGCAGTCAAGTCCATTAGTTTGTTTGAAGGAACCGACTTTAAGC
TTGCTTCTTCTGACTATCCTTTGAGTGACAAGGTTGCTCATGAATGTGGC
TTCACTTCTCTCTCTATTCGGATTGTCAAGGAATTGGTTACTTTTAGTTC
TCATCCTTTGTTGAACCCACCTGATGTTTCAAATGCTGGGAGGCATTTAT
CTGCAGTTGAGTTCCATTCCATTCTTCAGAGTACTGGGCAAGTTCTAGAC
AAAGAAAATGCAACTGATGATAAGAAACTTGTTCTGTTGGATGCAAGGAA
CTTATACGAGACTAGAATAGGGAAGTTCCGCACACCAGTGTGGAAACTTT
AGACCCCGAAATCAGGCAGTTTAGTGA
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