FC925261

Overview
NameFC925261
Unique NameFC925261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length331
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15496 contig Ccv1_Contig15496:353..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925261 vs. ExPASy Swiss-Prot
Match: NDUAC_ARATH (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.395e-19
Identity = 38/56 (67.86%), Postives = 48/56 (85.71%), Query Frame = 2
Query:    2 TGDDLLMLKPKRYGLEHRENLSGEGEEFIFHSKGHFLNPEQRDWSRYQPWEPSKKE 169
            TGD+LL LKPKRYGLEH+EN SGEG+ +I+HSKGH LNP Q++W+RYQ W P+K +
Sbjct:  104 TGDELLSLKPKRYGLEHKENFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKTQ 159          
The following BLAST results are available for this feature:
BLAST of FC925261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NDUAC_ARATH4.395e-1967.86Probable NADH dehydrogenase [ubiquinone] 1 alpha s... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YG12FM1 TF Citrus clementina cDNA clone KN0AAP8YG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925261 ID=FC925261; Name=FC925261; organism=Citrus clementina; type=EST; length=331bp
CACAGGAGATGACCTTCTGATGCTGAAACCGAAGAGATACGGACTTGAGC
ACAGGGAAAATTTATCGGGAGAGGGTGAGGAGTTTATCTTTCATTCCAAA
GGACATTTCCTCAATCCAGAGCAGAGAGACTGGTCTAGGTACCAACCATG
GGAACCCTCCAAGAAAGAGTAATTTCTTCATCAACTTCCCATGTTAACTT
GCAAAATCTGGGATTTTGGCTGCCGTTTCCATTAATAAAATGTCTTGTAC
TTGTTTGAAGCAATAGAATTTTTGCATTTGCTTACCACATTAATGAAATG
TCTTGTACTTGTTTGAATCTTTAGAATTTTT
back to top