FC925262

Overview
NameFC925262
Unique NameFC925262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925262_ssr61 microsatellite FC925262_ssr61:61..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1403 contig Ccv1_Contig1403:49..583. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NHP2_ARATH (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.649e-59
Identity = 111/154 (72.08%), Postives = 131/154 (85.06%), Query Frame = 3
Query:   21 GSDSEAHSTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDVKELASSL 482
            GSD+EA  +  K++KK  ++LAPIAKPLAGKKL KRT KL+++AA  KCLKRGVKEVVKSIRRG KGLCVIAGNISPIDVITH+PILCEE+ +PY+YV SKEDLA AGATKRPTCCVLV+ KP KG+L  EE  KLK DY  V++D+KELA+S+
Sbjct:    2 GSDTEAEKSIQKEKKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NHP2_YEAST (H/ACA ribonucleoprotein complex subunit 2 OS=Saccharomyces cerevisiae GN=NHP2 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 4.091e-34
Identity = 69/155 (44.52%), Postives = 109/155 (70.32%), Query Frame = 3
Query:   21 GSDSEAHSTPHKDE-----KKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDVKEL 470
            G D++ H    + +     + ++ ++ P AKPLA KKL+K+ LK V++A++ K +KRGVKEVVK++R+G KGL VIAG+ISP DVI+H+P+LCE+  +PYI++ SK+DL  AGATKRPT  V ++    K + G+ ++++ K  +  V ++V+ L
Sbjct:    2 GKDNKEHKESKESKTVDNYEARMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 156          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NHP2_SCHPO (H/ACA ribonucleoprotein complex subunit 2 OS=Schizosaccharomyces pombe GN=nhp2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.114e-31
Identity = 67/145 (46.21%), Postives = 103/145 (71.03%), Query Frame = 3
Query:   39 HSTPHKDEKKKIV-SLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDVKEL 470
            HS   +DE    + +L PIAKPLA KKL+K+ +K V++A++ K + RGVKEVVK++R+G KGL ++AG+ISP+DVI+H+P+LCE++++PY+Y  SKE L  A  TKRPT CV+++    K ++ + E+   K  Y  + ++V  L
Sbjct:   10 HSGSTEDEYDSYLPALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEE--YKESYEEIIKEVPAL 152          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NHP2_XENTR (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus tropicalis GN=nhp2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.381e-28
Identity = 59/123 (47.97%), Postives = 81/123 (65.85%), Query Frame = 3
Query:    9 KKKTGSDSEAHSTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 377
            K K     E   TP K   + +  L PIAKPLAG+KL+K+  K V++A + K ++RGVKEV K I +G KG+ V+AG+  PI+V  H+P++CE+  IPY YV SK DL  A  +KRPTC +L+
Sbjct:    3 KAKKEESEEVPETPSKSYDELLAYLNPIAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NHP2_XENLA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus laevis GN=nhp2 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.840e-27
Identity = 58/123 (47.15%), Postives = 81/123 (65.85%), Query Frame = 3
Query:    9 KKKTGSDSEAHSTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 377
            K K     E   TP K   + +  L P+AKPLAG+KL+K+  K V++A + K ++RGVKEV K I +G KG+ V+AG+  PI+V  H+P++CE+  IPY YV SK DL  A  +KRPTC +L+
Sbjct:    3 KVKKEECEEVPETPSKSYDELLSYLNPVAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NHP2_MOUSE (H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus GN=Nhp2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.356e-26
Identity = 60/141 (42.55%), Postives = 94/141 (66.67%), Query Frame = 3
Query:   12 KKTGSDSEAHSTPHKDE---KKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDK 425
            K    +SEA +    +E   K+ +V+L PIA+PLA ++L+++  K +++A + K ++RGVKEV K + +G KG+ V+AG+  PI+V  H+P+LCE+ ++PY+Y+ SK DL  A  +KRPTC ++V  KP   E  QE  DK
Sbjct:    5 KAAPEESEAQAEGCSEERTYKELLVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMV--KP--HEEYQETYDK 141          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NHP2_DANRE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio GN=nhp2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.356e-26
Identity = 64/154 (41.56%), Postives = 92/154 (59.74%), Query Frame = 3
Query:    9 KKKTGSDSEAHSTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDVKEL 470
            KK+   + E   T  K  ++ I ++ PIA PLA +KLSK+  K V++AA+ K ++RGVKEV K I +G  G+ V AG+  PIDV  H+PI+CE+  +PY YV SK DL ++  +KRPTC +++  KP          D+ K  Y    E+V  L
Sbjct:    5 KKEKAGEEETGGT-EKSYQELIANINPIANPLASRKLSKKLYKCVKKAAKVKQIRRGVKEVQKFINKGETGIVVFAGDTLPIDVYCHLPIMCEDRSLPYAYVPSKVDLGSSAGSKRPTCVIMI--KP---------HDEYKEAYDECVEEVTSL 146          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NHP2_BRABE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.356e-26
Identity = 60/158 (37.97%), Postives = 100/158 (63.29%), Query Frame = 3
Query:    9 KKKTGSDSEAH--STPHKDEKKKIVSLA-----PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDV 461
            KK    + E H  S  +K+++++   +      PIA PLA +KL+KR  K V++A++ K +++G+++V K I++G +G+ +IAG+ +PI+V  H+P++CE++ IPY YV +K+DL  A  +KRPTCCVL+  KP   E  Q   D+   D T +   +
Sbjct:    6 KKDKTEEKEEHEESGGNKEDRERAYEVLATRVNPIASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQKFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVLL--KP--NESYQSSYDECLTDVTTLPRPI 159          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NHP2_CAEBR (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis briggsae GN=CBG18231 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.995e-26
Identity = 55/125 (44.00%), Postives = 87/125 (69.60%), Query Frame = 3
Query:   24 SDSEAHSTPHKDEKKKIVSLA-PIAKPLAGKKLSKRTLKLVRRAAE-HKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 392
            ++  A  T  KDE + +  L  PIA+PLA +KL+K+  KL+++AA   K L+ G+K+V K +R+  KG+C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L  A   +RP+  +L+  KP+
Sbjct:   19 AEDVAALTTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKAAAGEKTLREGIKDVQKELRKNEKGICILAGNVSPIDVYSHIPAICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS 141          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NHP2_CAEEL (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis elegans GN=Y48A6B.3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.558e-25
Identity = 55/118 (46.61%), Postives = 84/118 (71.19%), Query Frame = 3
Query:   45 TPHKDEKKKIVSLA-PIAKPLAGKKLSKRTLKLVRRA-AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 392
            T  KDE + +  L  PIA+PLA +KL+K+  KL+++A A  K L+ G+K+V K +RR  KG+C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L  A   +RP+  +L+  KP+
Sbjct:   26 TTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS 141          
The following BLAST results are available for this feature:
BLAST of FC925262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
NHP2_ARATH1.649e-5972.08H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_YEAST4.091e-3444.52H/ACA ribonucleoprotein complex subunit 2 OS=Sacch... [more]
NHP2_SCHPO1.114e-3146.21H/ACA ribonucleoprotein complex subunit 2 OS=Schiz... [more]
NHP2_XENTR4.381e-2847.97H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_XENLA2.840e-2747.15H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_MOUSE5.356e-2642.55H/ACA ribonucleoprotein complex subunit 2 OS=Mus m... [more]
NHP2_DANRE5.356e-2641.56H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_BRABE5.356e-2637.97H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_CAEBR6.995e-2644.00Putative H/ACA ribonucleoprotein complex subunit 2... [more]
NHP2_CAEEL1.558e-2546.61Putative H/ACA ribonucleoprotein complex subunit 2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB11FM1 TF Citrus clementina cDNA clone KN0AAP11YB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925262 ID=FC925262; Name=FC925262; organism=Citrus clementina; type=EST; length=535bp
AGAACCGAAAAAAGAAAACGGGAAGCGACAGCGAAGCACACTCAACCCCC
CATAAAGATGAGAAGAAGAAGATTGTTAGTCTTGCTCCCATTGCTAAACC
TCTAGCTGGCAAGAAGCTCTCCAAAAGAACCCTCAAGCTTGTCCGTCGAG
CTGCTGAACACAAATGCTTGAAGAGAGGAGTGAAGGAAGTGGTCAAAAGT
ATCCGCCGTGGTCATAAAGGATTATGTGTTATAGCTGGGAACATTAGTCC
AATTGATGTCATCACTCACGTTCCTATCTTATGTGAAGAGTCTGATATTC
CCTACATTTATGTTGCTTCAAAAGAGGATCTTGCAAATGCCGGTGCCACA
AAGAGGCCAACATGCTGTGTTTTGGTGCTAACTAAGCCAACTAAGGGAGA
ACTAGGACAAGAGGAACAAGATAAGTTGAAAGCTGATTATACCCTCGTTG
CAGAGGATGTGAAGGAACTGGCATCCTCTCTTTTCTGACGAACTACACTT
AAAGCCAACAAAGATGATTGTGCTTACAGATATGT
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