FC925263

Overview
NameFC925263
Unique NameFC925263
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length795
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3789 contig Ccv1_Contig3789:1..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925263 vs. ExPASy Swiss-Prot
Match: GALM_RAT (Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.708e-50
Identity = 105/254 (41.34%), Postives = 146/254 (57.48%), Query Frame = 1
Query:    4 LPIIKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYT-XXXXXXXXXXXXXXXXXHSGVCLETXGFPNAINQPNFPSVVVRPGESYQHTMLFEFSV 762
            LPI + PNSLHGGF+GFDKV+W       G    + F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S +I DH + I      PVD+  +PTG I PV+GT FD     ++G  +      G+DHN+ L   +EK   K  A++   ++ R+L ++T  PG+QFYT                  HSG CLET  +P+A+NQP FP +++RPGE Y HT  F+FSV
Sbjct:   97 LPINREPNSLHGGFRGFDKVLWTPQVLSNG----VQFSRVSPDGEEGYPGELKVWVTYTLDGGELV-VNYRA-QASQTTPVNLTNHSYFNLAGQGSPDIYDHEVTIAADAYLPVDETLIPTGVIAPVEGTAFDLRKPVELGKHLQSYHIHGFDHNFCLKESKEK---KFCARVHHAASGRILEVYTTQPGVQFYTGNFLDGTLKGKSGEVYPKHSGFCLETQNWPDAVNQPQFPPILLRPGEEYNHTTWFKFSV 341          
BLAST of FC925263 vs. ExPASy Swiss-Prot
Match: GALM_MOUSE (Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.708e-50
Identity = 104/254 (40.94%), Postives = 147/254 (57.87%), Query Frame = 1
Query:    4 LPIIKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYT-XXXXXXXXXXXXXXXXXHSGVCLETXGFPNAINQPNFPSVVVRPGESYQHTMLFEFSV 762
            LP+ + PNSLHGGF GFDKV+W       G    + F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTG I PV+GT FD     ++G  + +    G+DHN+ L   +EK   K  A+++  ++ R+L ++T  PG+QFYT                  HSG+CLET  +P+++NQP FP  ++RPGE Y HT  F+FSV
Sbjct:   97 LPVNREPNSLHGGFTGFDKVLWTPQVLTNG----VQFFRVSPDGEEGYPGELKVWVTYTLDGGELV-INYRA-QASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTIAADAYLPVDETLIPTGVIAPVEGTAFDLRKPVELGTHLQDYHIHGFDHNFCLKESKEK---KFCARVRHAASGRILEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGLCLETQNWPDSVNQPQFPPALLRPGEEYNHTTWFKFSV 341          
BLAST of FC925263 vs. ExPASy Swiss-Prot
Match: GALM_PIG (Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.761e-50
Identity = 108/254 (42.52%), Postives = 144/254 (56.69%), Query Frame = 1
Query:    4 LPIIKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYT-XXXXXXXXXXXXXXXXXHSGVCLETXGFPNAINQPNFPSVVVRPGESYQHTMLFEFSV 762
            L I   PNSLHGG +GFDKV+W       G    I F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTGEI PV+GT FD     ++G  + E    G+DHN+ L   +EK   +  A++    + RVL ++T  PG+QFYT                  HSG CLET  +PNA+NQP+FP V+++PGE Y HT  F FSV
Sbjct:   97 LAINNGPNSLHGGVRGFDKVLWTPRVLSNG----IEFSRVSPDGEEGYPGELKVWVTYTLDGGELV-VNYRA-QASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTIEADAFLPVDETLIPTGEIAPVQGTAFDLRKPVELGKHLQEFHINGFDHNFCLKRSKEK---QFCARVHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAVYPKHSGFCLETQNWPNAVNQPHFPPVLLKPGEEYNHTTWFVFSV 341          
BLAST of FC925263 vs. ExPASy Swiss-Prot
Match: GALM_HUMAN (Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.952e-49
Identity = 106/254 (41.73%), Postives = 145/254 (57.09%), Query Frame = 1
Query:    4 LPIIKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYT-XXXXXXXXXXXXXXXXXHSGVCLETXGFPNAINQPNFPSVVVRPGESYQHTMLFEFSV 762
            L I K PNSLHGG +GFDKV+W       G    + F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTGE+ PV+GT FD     ++G  + +    G+DHN+ L   +EK      A++   ++ RVL ++T  PG+QFYT                  HSG CLET  +P+A+NQP FP V++RPGE Y HT  F+FSV
Sbjct:   97 LAINKEPNSLHGGVRGFDKVLWTPRVLSNG----VQFSRISPDGEEGYPGELKVWVTYTLDGGELI-VNYRA-QASQATPVNLTNHSYFNLAGQASPNINDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSKEK---HFCARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFSV 341          
BLAST of FC925263 vs. ExPASy Swiss-Prot
Match: GALM_PONAB (Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.348e-49
Identity = 106/254 (41.73%), Postives = 144/254 (56.69%), Query Frame = 1
Query:    4 LPIIKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYT-XXXXXXXXXXXXXXXXXHSGVCLETXGFPNAINQPNFPSVVVRPGESYQHTMLFEFSV 762
            L I K PNSLHGG +GFDKV+W       G    I F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTGE+ PV+GT FD     ++G  + +    G+DHN+ L   +EK      A++   ++ RVL ++T  PG+QFY                   HSG CLET  +P+A+NQP FP V++RPGE Y HT  F+FSV
Sbjct:   97 LAINKEPNSLHGGVRGFDKVLWTPRVLSNG----IQFSRISPDGEEGYPGELKVWVTYTLDGGELV-VNYRA-QASQATPVNLTNHSYFNLAGQGSPNIYDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSKEK---HFCARVHHAASGRVLEVYTTQPGVQFYMGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFSV 341          
BLAST of FC925263 vs. ExPASy Swiss-Prot
Match: GALM_BOVIN (Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.807e-48
Identity = 105/254 (41.34%), Postives = 143/254 (56.30%), Query Frame = 1
Query:    4 LPIIKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYT-XXXXXXXXXXXXXXXXXHSGVCLETXGFPNAINQPNFPSVVVRPGESYQHTMLFEFSV 762
            L I   PNSLHGG KGFDKV+W       G    + F   S DGEEGYPG++ V   YTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTGEI  V+GT FD     ++G  + E    G+DHN+ L   +EK   +  A++    + RVL ++T  PG+QFYT                  HSG CLET  +P+A+NQP+FP V+++PGE Y HT  F+FSV
Sbjct:   97 LAINNGPNSLHGGVKGFDKVLWTPRVLSNG----VEFSRVSPDGEEGYPGELKVWVMYTLDGGELV-VNYRA-QASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTIEADAFLPVDEVLIPTGEIASVQGTAFDLRKPVELGKHLQEFHVNGFDHNFCLKGSKEK---RFCARVHHAGSGRVLEVYTTQPGVQFYTGNFLDGTLKGKSGAGYPKHSGFCLETQSWPDAVNQPHFPPVLLKPGEEYDHTTWFKFSV 341          
BLAST of FC925263 vs. ExPASy Swiss-Prot
Match: GALM_ACICA (Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.111e-36
Identity = 89/257 (34.63%), Postives = 136/257 (52.92%), Query Frame = 1
Query:   22 PNSLHGGFKGFDKVVWEVAEY-KKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNL--AGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINE-----VPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXXXXXXXXXHS-GVCLETXGFPNAINQPNFPSVVVRPGESYQHTMLFEFSVE 765
            PNSLH G  GFDK VW+V     KGE    + K  S +G++G+PG + V   Y+L+     +++ +A  + +PT ++L  H+Y+NL  AG++   +LDH +Q+    I   DQN++PTGEI  V GTPFDF   K I   I         G GYD  +V++  + +  L  AA + +P + R + + T  P +Q YT                  +  + LET  FP++ NQP FPS  + P ++Y    +F+F V+
Sbjct:  126 PNSLHSGNPGFDKRVWQVKPLVSKGETVKASLKLTSPNGDQGFPGKLDVEVIYSLSDQNEFKIEYKAKTD-QPTVVNLTNHSYFNLSGAGNNPYGVLDHVVQLNAGRILVTDQNSLPTGEIASVAGTPFDFRMPKAIVKDIRANNQQLAYGYGYDQTWVIN-QKSQGKLNLAAIVVDPKSKRTMQVLTTEPSVQMYTADHLLGNIVGANGVLYRQADALALETQHFPDSPNQPTFPSTRLNPNQTYNSVTVFKFGVQ 380          
BLAST of FC925263 vs. ExPASy Swiss-Prot
Match: GALM_SHIFL (Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.426e-28
Identity = 76/253 (30.04%), Postives = 119/253 (47.04%), Query Frame = 1
Query:   25 NSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIG----ASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXXXXXXXXXHSGVCLETXGFPNAINQPNF--PSVVVRPGESYQHTMLFEFSVE 765
            N LHGG +GFDK  W++      +   + F   S DG++G+PG++     Y LT    + +   A  + KP P+++  H Y+NL G  S ++ +H +QI      PVD+  +P   +  V GT FDF + K I     A  ++    GYDH ++L    +  G K AA +        L ++T AP +QFY+                   G+ LE+   P++ N P +  P   +RPGE Y     ++F  E
Sbjct:  101 NQLHGGPEGFDKRRWQIVNQNDRQ---VLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRATVD-KPCPVNMTNHVYFNLDGEQS-DVRNHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQA--KGDGKKVAAHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEEYSSLTEYQFIAE 346          
BLAST of FC925263 vs. ExPASy Swiss-Prot
Match: GALM_ECOLI (Aldose 1-epimerase OS=Escherichia coli (strain K12) GN=galM PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.426e-28
Identity = 76/253 (30.04%), Postives = 119/253 (47.04%), Query Frame = 1
Query:   25 NSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIG----ASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXXXXXXXXXHSGVCLETXGFPNAINQPNF--PSVVVRPGESYQHTMLFEFSVE 765
            N LHGG +GFDK  W++      +   + F   S DG++G+PG++     Y LT    + +   A  + KP P+++  H Y+NL G  S ++ +H +QI      PVD+  +P   +  V GT FDF + K I     A  ++    GYDH ++L    +  G K AA +        L ++T AP +QFY+                   G+ LE+   P++ N P +  P   +RPGE Y     ++F  E
Sbjct:  101 NQLHGGPEGFDKRRWQIVNQNDRQ---VLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRATVD-KPCPVNMTNHVYFNLDGEQS-DVRNHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQA--KGDGKKVAAHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEEYSSLTEYQFIAE 346          
BLAST of FC925263 vs. ExPASy Swiss-Prot
Match: GALM_HAEIN (Aldose 1-epimerase OS=Haemophilus influenzae GN=galM PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.408e-23
Identity = 74/246 (30.08%), Postives = 117/246 (47.56%), Query Frame = 1
Query:   25 NSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSG-NILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASI---NEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXXXXXXXXXHSGVCLETXGFPNAINQP---NFPSVVVRPGESYQHT 741
            + LHGG +GFDK  W + E   GEN  + F   S DG++G+PG+V V  TYTLT   +++++   + + K T ++L  HTY+NL     G ++ +H++++      PVD   +P   +  V  T FDF   K I       ++    GYDH+++++    K+  K    L  P+    L + T+   +Q YT                  SG+ LET   P+  N P   N+  +    G  YQ T
Sbjct:   99 HQLHGG-EGFDKRRWNIQEC--GEN-FVCFSLHSVDGDQGFPGNVDVSVTYTLTGDNSVKIEYAGMCD-KDTALNLTNHTYFNLENAEQGSDVREHTLRLNADFYLPVDNEGIPNSPLKHVVNTSFDFRIAKPIKQDFLQGDQQATKGYDHSFIVN----KAWQKPCVLLTSPTGDLSLEVRTSQAALQVYTGNYLAGTPTRNGELYADFSGIALETQCLPDTPNHPEWQNYGGIQKAGGRYYQWT 335          
The following BLAST results are available for this feature:
BLAST of FC925263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GALM_RAT6.708e-5041.34Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE... [more]
GALM_MOUSE6.708e-5040.94Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV... [more]
GALM_PIG8.761e-5042.52Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1[more]
GALM_HUMAN1.952e-4941.73Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV... [more]
GALM_PONAB4.348e-4941.73Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV... [more]
GALM_BOVIN4.807e-4841.34Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1[more]
GALM_ACICA1.111e-3634.63Aldose 1-epimerase OS=Acinetobacter calcoaceticus ... [more]
GALM_SHIFL9.426e-2830.04Aldose 1-epimerase OS=Shigella flexneri GN=galM PE... [more]
GALM_ECOLI9.426e-2830.04Aldose 1-epimerase OS=Escherichia coli (strain K12... [more]
GALM_HAEIN1.408e-2330.08Aldose 1-epimerase OS=Haemophilus influenzae GN=ga... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YG13FM1 TF Citrus clementina cDNA clone KN0AAP8YG13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925263 ID=FC925263; Name=FC925263; organism=Citrus clementina; type=EST; length=795bp
ACTTTGCCCATCATCAAGCCACCAAACAGTCTCCATGGTGGGTTCAAGGG
TTTTGATAAAGTTGTCTGGGAGGTAGCAGAATATAAGAAAGGTGAAAACC
CTTCCATTACTTTCAAGTATCGCAGCCGTGATGGCGAGGAAGGTTACCCA
GGGGATGTTTCTGTGATGGCAACCTACACACTAACATCAAGCACGACAAT
GAGGCTTGACATGGAAGCAGTTCCAGAAAACAAGCCGACCCCAATCAGTT
TAGCTCAACACACGTACTGGAACTTAGCAGGCCATCATTCAGGGAACATA
CTTGACCACTCAATTCAAATATGGGGATCACACATTACTCCTGTAGATCA
GAACACGGTCCCAACTGGAGAAATTATGCCAGTCAAGGGCACCCCTTTTG
ATTTCACCACTGAGAAAAAGATTGGTGCATCAATCAATGAAGTACCTGGT
TTAGGGTATGATCACAACTATGTTCTTGATTGTGGAGAAGAGAAATCAGG
TCTGAAACATGCTGCAAAACTGAAGGAACCATCAACCTCAAGGGTCCTTA
ATTTATGGACCAATGCCCCAGGCATGCAGTTTTACACTGGTAACTATGTT
AACGGAGTTGTTGGAAAAGGGGGTGCAGTTTATGGAAAGCACTCAGGTGT
CTGCTTGGAGACGCANGGGTTTCCTAACGCCATAAATCAACCTAACTTCC
CTTCTGTTGTGGTTCGACCCGGTGAGAGCTACCAACATACTATGTTGTTT
GAGTTTTCAGTAGAGTGAACTATTAGTCTCTTGAAAAGAATTTCT
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