FC925266

Overview
NameFC925266
Unique NameFC925266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11770 contig Ccv1_Contig11770:5..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925266 vs. ExPASy Swiss-Prot
Match: BBP_CRYNE (Branchpoint-bridging protein OS=Cryptococcus neoformans GN=BBP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.700e-11
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 3 
Query:  495 RKRRSRWADDEPKPVIQLPDFMKDFTGGI-EFDPEIQALNSRLLEISRMLQSGLPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEII 785
            RKRRSRW D   K  + +P       G + + + +  A++ RL EI+R L++G  +   PEGQRSPSP P YD  G R NTRE R R++L  ER  +I
Sbjct:  129 RKRRSRWGDASAK--VNVPGMPVAVMGNVSQTELDNYAIHVRLEEINRKLRTGDVVP--PEGQRSPSPTPQYDAYGRRTNTRELRYRKKLEDERTRLI 222
The following BLAST results are available for this feature:
BLAST of FC925266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BBP_CRYNE2.700e-1143.88Branchpoint-bridging protein OS=Cryptococcus neofo... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YG14FM1 TF Citrus clementina cDNA clone KN0AAP8YG14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925266 ID=FC925266; Name=FC925266; organism=Citrus clementina; type=EST; length=788bp
TTCAAAACATTCACATCTGAGACCTTCACCAACGAACGCACGCGCGCAAC
ACCTCTCTCGACCCGTCGCTAGCCGTCACGAAAGACTCACAATCCATGGA
GTCAACAGTTGAATCAAACCCCCAATATCAAACCCTAGATTTCAATCAAA
ACCCGCCGTTACCGCAAGACACCCTAGATCACGATTCACAAAACCCGCCC
AAAACCCTAGCTCCTCCCGATGCTCAAAATCCCCAGCCGGCTTCCGAAAA
CGGCCACGACAAAAACAATGAGAACAGCTGTAACAATAACAATGACGTCG
CTGCAGCCGATTACATTAAGCAGAAGCCGTTGCTTTCGGAAAATGGTCTG
ACCAACACTCATTCCGGCACCGATAAGGATCAGTCGGGTGGCGAGGAGGA
GACCACAAGCAGACGACGACGTCGCAGCAGGTGGGACCCGCCGCCATCGG
AATCAGGCGGCACGGAAGGTAATGGCGACTCTGGAAGCGGGACCAGGAAG
CGGAGATCGAGGTGGGCGGACGATGAGCCGAAGCCGGTGATTCAGTTGCC
GGATTTTATGAAGGACTTTACTGGAGGTATTGAGTTTGACCCGGAAATTC
AAGCTTTGAATAGTCGTTTGTTAGAAATTTCTAGAATGCTTCAGTCTGGT
TTGCCTTTAGATGATAGACCTGAGGGACAAAGGAGTCCTTCGCCCGAACC
AATTTATGATAATATGGGAATTAGGATTAATACTAGAGAGTATCGTGCAA
GAGAGAGATTGAATAAGGAGAGACAGGAGATTATATCT
back to top