FC925267

Overview
NameFC925267
Unique NameFC925267
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14398 contig Ccv1_Contig14398:51..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925267 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 5.235e-107
Identity = 192/217 (88.48%), Postives = 203/217 (93.55%), Query Frame = 3
Query:   87 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELPEVFL 737
            MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGIL+KDGVVL+GEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYT++YQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK            S+LKQDYKDD++RE+AV+LALK LSKTMDSTSLTS+KLEL EV+L
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILAKDGVVLIGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKATAIGANNQAAQSMLKQDYKDDVTREDAVKLALKALSKTMDSTSLTSEKLELAEVYL 217          
BLAST of FC925267 vs. ExPASy Swiss-Prot
Match: PSA4_ARATH (Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 7.560e-106
Identity = 192/217 (88.48%), Postives = 201/217 (92.63%), Query Frame = 3
Query:   87 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELPEVFL 737
            MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVL+GEKKVTSKLLQTSTS EKMYKIDDHVACAVAGIMSDANILINTARVQAQRYT+ YQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDK++GFQLYMSDPSGNYGGWK            SILKQDYKDD +REEAV+LALKVL+KTMDSTSLTS+KLEL EV+L
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKDDATREEAVELALKVLTKTMDSTSLTSEKLELAEVYL 217          
BLAST of FC925267 vs. ExPASy Swiss-Prot
Match: PSA4_PETHY (Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 2.873e-105
Identity = 192/217 (88.48%), Postives = 201/217 (92.63%), Query Frame = 3
Query:   87 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELPEVFL 737
            MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGI SKDGVVLVGEKKVTSKLLQTSTS+EKMYKIDDHVACAVAGIMSDANILINTARVQAQRYT++YQEPMPVEQLVQSLCDTKQGYTQ+GGL PFGVSFLFAGWDKN+GFQL+MSDPSGNY GWK            S+LKQDYKDDI+REEAVQLALKVLSKTMDSTSLTS+KLEL EVFL
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGISSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQYGGLPPFGVSFLFAGWDKNFGFQLFMSDPSGNYAGWKAAAIGANNQAAQSMLKQDYKDDITREEAVQLALKVLSKTMDSTSLTSEKLELAEVFL 217          
BLAST of FC925267 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.527e-98
Identity = 178/217 (82.03%), Postives = 194/217 (89.40%), Query Frame = 3
Query:   87 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELPEVFL 737
            MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSA+G+L+ DGVVLVGEKKVTSKLLQTS S EKMYKID H+ACAVAGIMSDANIL+NTAR+ AQRY  +YQEP+PVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDK++GFQLYMSDPSGNY GWK            S+LKQDY+D ++REEAV LALKVLSKTMDSTSLT++KLEL EVFL
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDSTSLTAEKLELAEVFL 217          
BLAST of FC925267 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.527e-98
Identity = 178/217 (82.03%), Postives = 194/217 (89.40%), Query Frame = 3
Query:   87 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELPEVFL 737
            MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSA+G+L+ DGVVLVGEKKVTSKLLQTS S EKMYKID H+ACAVAGIMSDANIL+NTAR+ AQRY  +YQEP+PVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDK++GFQLYMSDPSGNY GWK            S+LKQDY+D ++REEAV LALKVLSKTMDSTSLT++KLEL EVFL
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDSTSLTAEKLELAEVFL 217          
BLAST of FC925267 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 1.994e-98
Identity = 178/217 (82.03%), Postives = 194/217 (89.40%), Query Frame = 3
Query:   87 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELPEVFL 737
            MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSA+G+L+ DGVVLVGEKKVTSKLLQTS S EKMYKID H+ACAVAGIMSDANIL+NTAR+ AQRY  +YQEP+PVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDK++GFQLYMSDPSGNY GWK            S+LKQDY+D ++REEAV LALKVLSKTMDSTSLT++KLEL EVFL
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDSTSLTAEKLELAEVFL 217          
BLAST of FC925267 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2)

HSP 1 Score: 358.607 bits (919), Expect = 1.994e-98
Identity = 178/217 (82.03%), Postives = 194/217 (89.40%), Query Frame = 3
Query:   87 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELPEVFL 737
            MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSA+G+L+ DGVVLVGEKKVTSKLLQTS S EKMYKID H+ACAVAGIMSDANIL+NTAR+ AQRY  +YQEP+PVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDK++GFQLYMSDPSGNY GWK            S+LKQDY+D ++REEAV LALKVLSKTMDSTSLT++KLEL EVFL
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDSTSLTAEKLELAEVFL 217          
BLAST of FC925267 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 7.125e-80
Identity = 145/213 (68.08%), Postives = 176/213 (82.63%), Query Frame = 3
Query:   87 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTS-TEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK-XXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLE 719
            M+RRYD RTTIFSPEGR+YQVEYAM AI +AG+ +GIL+KDG+VL  EKK T+KLL +STS +EKM+KID+HV CAVAGI SDANILIN AR+ +QR+ Y YQEPMPVEQLV  +CDTKQGYTQ+GGLRPFGVSFL+AGWD++YGFQLY SDPSGN+ GWK             S+L+ +YK DIS +EA+QLALKVL+KTMD +++ S+KLE
Sbjct:    1 MARRYDQRTTIFSPEGRVYQVEYAMTAIRHAGATVGILAKDGIVLAAEKKTTAKLLDSSTSISEKMFKIDEHVVCAVAGITSDANILINYARLSSQRFFYQYQEPMPVEQLVSQICDTKQGYTQYGGLRPFGVSFLYAGWDRHYGFQLYQSDPSGNFAGWKATSIGGENSQVAQSVLRSNYKPDISLKEALQLALKVLTKTMDRSNINSEKLE 213          
BLAST of FC925267 vs. ExPASy Swiss-Prot
Match: PSA4_YEAST (Proteasome component Y13 OS=Saccharomyces cerevisiae GN=PRE9 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.206e-72
Identity = 131/214 (61.21%), Postives = 166/214 (77.57%), Query Frame = 3
Query:   90 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELPEV 731
            SRRYDSRTTIFSPEGRLYQVEYA+E+I +AG+AIGI++ DG+VL  E+KVTS LL+  TSTEK+YK++D +A AVAG+ +DA ILINTAR+ AQ Y   Y E +PVE LV+ L D KQGYTQ GGLRPFGVSF++AG+D  YG+QLY S+PSGNY GWK            ++L+ DYKDD+  ++A++LALK LSKT DS++LT D+LE   +
Sbjct:    3 SRRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATI 216          
BLAST of FC925267 vs. ExPASy Swiss-Prot
Match: PSA4_SCHPO (Probable proteasome subunit alpha type-4 OS=Schizosaccharomyces pombe GN=SPAC13C5.01c PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.218e-71
Identity = 130/215 (60.47%), Postives = 164/215 (76.28%), Query Frame = 3
Query:   87 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELPEV 731
            MSR YDSRTTIFSPEGRLYQVEYA+EAI +AG A+GI++KDG+VL  EKKVTSKLL+   S EK+Y I D++ CAVAG+ +DANILIN AR   Q+Y   + E MP EQLV+ +CD KQGYTQ+GGLRPFGVSFL+AGWD   G+QL+ S+PSGNYG W+            S+++Q+YKDDI+ +EA  +A+K LSKT+DS SLT +K+E   +
Sbjct:    1 MSRSYDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDDINLDEASAMAVKFLSKTLDSNSLTHEKIEFATI 215          
The following BLAST results are available for this feature:
BLAST of FC925267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA4_SPIOL5.235e-10788.48Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]
PSA4_ARATH7.560e-10688.48Proteasome subunit alpha type-4 OS=Arabidopsis tha... [more]
PSA4_PETHY2.873e-10588.48Proteasome subunit alpha type-4 OS=Petunia hybrida... [more]
PSA4B_ORYSJ1.527e-9882.03Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4B_ORYSI1.527e-9882.03Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4A_ORYSJ1.994e-9882.03Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA4A_ORYSI1.994e-9882.03Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA4_DICDI7.125e-8068.08Proteasome subunit alpha type-4 OS=Dictyostelium d... [more]
PSA4_YEAST3.206e-7261.21Proteasome component Y13 OS=Saccharomyces cerevisi... [more]
PSA4_SCHPO1.218e-7160.47Probable proteasome subunit alpha type-4 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YF03FM1 TF Citrus clementina cDNA clone KN0AAP3YF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925267 ID=FC925267; Name=FC925267; organism=Citrus clementina; type=EST; length=737bp
TAATAGCGAACTTACTGAGCTTTAACGAAGGGTCGAAGAGCATTACCTTT
GAGTAGGCTGACAAAGAATTACATTCATAACCAAAAATGTCTCGGAGATA
TGATAGCCGTACCACAATTTTCTCCCCTGAAGGCCGTCTCTATCAAGTTG
AGTATGCAATGGAGGCCATTGGAAATGCTGGTAGTGCAATTGGAATATTA
TCGAAAGATGGGGTTGTCTTGGTTGGTGAAAAGAAGGTTACTTCGAAGCT
CCTGCAAACCTCAACTTCCACTGAGAAGATGTACAAGATTGATGATCATG
TTGCTTGTGCCGTAGCTGGAATAATGTCTGATGCCAACATCCTAATCAAC
ACTGCCAGGGTCCAAGCCCAACGTTACACATATGCCTACCAAGAGCCAAT
GCCTGTTGAGCAGCTTGTTCAATCTCTTTGTGATACAAAGCAAGGTTACA
CCCAGTTTGGCGGTCTCCGCCCCTTTGGTGTTTCATTTCTTTTTGCAGGG
TGGGACAAAAATTATGGCTTCCAACTTTACATGAGTGATCCTAGTGGAAA
CTATGGTGGTTGGAAAGCTGCTGCTATTGGTGCAAATAACCAGGCTGCAC
AATCAATCCTCAAACAAGATTACAAGGATGATATTTCAAGGGAAGAAGCA
GTTCAACTAGCACTGAAGGTGCTCAGCAAAACCATGGACAGCACCAGTCT
TACTTCTGATAAGCTTGAATTACCTGAGGTTTTCCTG
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