FC925269

Overview
NameFC925269
Unique NameFC925269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length405
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14615 contig Ccv1_Contig14615:1..405. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC925269 vs. ExPASy Swiss-Prot
Match: HEXA_BOVIN (Beta-hexosaminidase subunit alpha OS=Bos taurus GN=HEXA PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.588e-11
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 2 
Query:   71 GEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 250
            GE CMWGE VD++++   +WPRA A AERLW+  +K+         RLAHFRC L +RG+
Sbjct:  455 GEACMWGEYVDSTNLVPRLWPRAGAVAERLWS--NKMVSNLDFAFKRLAHFRCELLRRGV 512
The following BLAST results are available for this feature:
BLAST of FC925269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HEXA_BOVIN7.588e-1150.00Beta-hexosaminidase subunit alpha OS=Bos taurus GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YG15FM1 TF Citrus clementina cDNA clone KN0AAP8YG15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925269 ID=FC925269; Name=FC925269; organism=Citrus clementina; type=EST; length=405bp
GAACAANTCTATATGAACGAACCACTTACAAATATCACAAAATCCGAGCA
GCAGAAATTAGTTATAGTGTGGTGAAGTATGCATGTGGGGTGAAACAGTT
GATGCATCGGATATTCAGCAAACCATATGGCCACGAGCTGCAGCAGCTGC
AGAGCGGTTATGGACCCCATATGACAAGCTGGCAAAGGAGGCAAAGCAAG
TTACCGGAAGGCTGGCACATTTCAGGTGTTTGCTGAATCAAAGAGGAATT
GCGGCTGCTCCATTAGCTGCCGACACTCCATTAACTCAACCAGGCCGCTC
TGCTCCCCTAGAGCCTGGTTCTTGCTATTTGCAATGATAGCTGAATCATA
TCTGCAAATTTTAATGCATAAAAAGGAAACTGATCCAAAACCGCTCCCAT
CTTTT
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