FC925320

Overview
NameFC925320
Unique NameFC925320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3793 contig Ccv1_Contig3793:2..411. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME21_ARATH (Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 2.647e-48
Identity = 87/134 (64.93%), Postives = 107/134 (79.85%), Query Frame = 1
Query:    1 ARVFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            + + F GDG  KT I+GN NY DG  T  TATV+I+G +F+AKNIGFEN+AG  KHQAVA+RV +D SIF+NC  DGYQDTLYTH+ RQ++RDCTI+GTIDF+FGD +A FQNC ++VRKPL N  C +TAHGR
Sbjct:  304 SHLVFIGDGPDKTIISGNKNYKDGITTYRTATVAIVGNYFIAKNIGFENTAGAIKHQAVAVRVQSDESIFFNCRFDGYQDTLYTHSHRQFFRDCTISGTIDFLFGDAAAVFQNCTLLVRKPLPNQACPITAHGR 437          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.225e-46
Identity = 86/130 (66.15%), Postives = 103/130 (79.23%), Query Frame = 1
Query:   13 FFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            F GDG  KT I+G+ +Y DG  T  TATV+I+G+ F+AKNI FEN+AG  KHQAVA+RV AD SIFYNC  DGYQDTLY H+ RQ+YRDCTI+GTIDF+FGD +A FQNC ++VRKPL N  C +TAHGR
Sbjct:  305 FIGDGPDKTVISGSKSYKDGITTYKTATVAIVGDHFIAKNIAFENTAGAIKHQAVAIRVLADESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQNCTLLVRKPLLNQACPITAHGR 434          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME_PETIN (Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.097e-45
Identity = 85/132 (64.39%), Postives = 98/132 (74.24%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            V   G+G  KT+ITGN +  DG  T HT TV + G  F+AKNIGFEN+AGPEK QAVALRV AD +I YNC +DGYQDTLY H  RQ+YRDCTITGT+DFIFG+  A  QNC +IVRKP  N  C+VTA GR
Sbjct:  109 VVLIGEGPTKTKITGNKSVKDGPSTFHTTTVGVNGANFVAKNIGFENTAGPEKEQAVALRVSADKAIIYNCQIDGYQDTLYVHTYRQFYRDCTITGTVDFIFGNGEAVLQNCKVIVRKPAQNQSCMVTAQGR 240          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME58_ARATH (Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.672e-45
Identity = 84/134 (62.69%), Postives = 105/134 (78.36%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDG-TPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGRN 405
            V F GDG  KT+ITG+LNY  G   T  TATV+I G+ F AKNIGFEN+AGPE HQAVALRV AD+++FYNC +DGYQDTLY H+ RQ++RDCT++GT+DFIFGD     QNC I+VRKP+ +  C++TA GR+
Sbjct:  310 VTFIGDGPTKTKITGSLNYYIGKVKTYLTATVAINGDNFTAKNIGFENTAGPEGHQAVALRVSADLAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFIFGDGIVVLQNCNIVVRKPMKSQSCMITAQGRS 443          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME43_ARATH (Putative pectinesterase/pectinesterase inhibitor 43 OS=Arabidopsis thaliana GN=PME43 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.170e-42
Identity = 76/133 (57.14%), Postives = 103/133 (77.44%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYV-DGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            V F GDG  KT ITG++ ++ D   T  TA+V++ G++FMAK+IGFEN+AG  +HQAVALRV AD ++F+NC M+GYQDTLY H  RQ+YR+C ++GTIDF+FGD  A FQNC  ++R+P+++  CIVTA GR
Sbjct:  442 VMFVGDGPTKTVITGDIAFLPDQVGTYRTASVAVNGDYFMAKDIGFENTAGAARHQAVALRVSADFAVFFNCHMNGYQDTLYVHTHRQFYRNCRVSGTIDFVFGDAKAVFQNCEFVIRRPMEHQQCIVTAQGR 574          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.314e-42
Identity = 79/132 (59.85%), Postives = 97/132 (73.48%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            V   GDG  KT+ TG+LNY DG  T +TAT  + G  FMAK+IGFEN+AG  KHQAVALRV AD +IFYNC MDG+QDTLY  ++RQ+YRDC+I+GTIDF+FG+    FQNC ++ R P     C+VTA GR
Sbjct:  182 VTVIGDGPTKTKFTGSLNYADGINTYNTATFGVNGANFMAKDIGFENTAGTGKHQAVALRVTADQAIFYNCQMDGFQDTLYVQSQRQFYRDCSISGTIDFVFGERFGVFQNCKLVCRLPAKGQQCLVTAGGR 313          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME46_ARATH (Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.981e-41
Identity = 72/132 (54.55%), Postives = 97/132 (73.48%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            V   GDG  KT ++  LN++DGTPT  TAT ++ G+ FMA+++GF N+AGP KHQAVAL V AD+S+FY C+MD +QDT+Y HA+RQ+YRDC I GT+DFIFG+ +  FQ C I+ R+P+      +TA GR
Sbjct:  308 VVMVGDGQSKTIVSAGLNFIDGTPTFETATFAVFGKGFMARDMGFINTAGPAKHQAVALMVSADLSVFYKCTMDAFQDTMYAHAQRQFYRDCVILGTVDFIFGNAAVVFQKCEILPRRPMKGQQNTITAQGR 439          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME23_ARATH (Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 1.191e-40
Identity = 79/134 (58.96%), Postives = 99/134 (73.88%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDG-TPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGRN 405
            V F GDG  KT ITG+LN+  G   T  TAT++I G+ F AKNIG EN+AGPE  QAVALRV AD ++F++C +DG+QDTLY H+ RQ+YRDCT++GT+DFIFGD     QNC I+VRKP     C+VTA GR+
Sbjct:  308 VTFIGDGPNKTLITGSLNFGIGKVKTFLTATITIEGDHFTAKNIGIENTAGPEGGQAVALRVSADYAVFHSCQIDGHQDTLYVHSHRQFYRDCTVSGTVDFIFGDAKCILQNCKIVVRKPNKGQTCMVTAQGRS 441          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.031e-40
Identity = 75/132 (56.82%), Postives = 98/132 (74.24%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            +   GDGM  T I+GN ++VDG  T  +AT ++ G  F+A++I FEN+AGPEKHQAVALR D+D+S+FY C++ GYQDTLYTH  RQ+YRDC I+GT+DFIFGD +  FQNC I+ +K L N    +TA GR
Sbjct:  259 LMMIGDGMDATIISGNRSFVDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVFYRCNIRGYQDTLYTHTMRQFYRDCKISGTVDFIFGDATVVFQNCQILAKKGLPNQKNSITAQGR 390          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.653e-40
Identity = 74/132 (56.06%), Postives = 98/132 (74.24%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            V  +GDG  KT + G+ N++DGTPT  TAT ++ G+ F+AK+IGF N+AG  KHQAVALR  +D S+F+ CS DG+QDTLY H+ RQ+YRDC ITGTIDFIFG+ +  FQ+C I+ R+PL N    +TA G+
Sbjct:  324 VMIYGDGKDKTFVVGSRNFMDGTPTFETATFAVKGKGFIAKDIGFVNNAGASKHQAVALRSGSDRSVFFRCSFDGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQSCKIMPRQPLPNQFNTITAQGK 455          
The following BLAST results are available for this feature:
BLAST of FC925320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
PME21_ARATH2.647e-4864.93Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME28_ARATH4.225e-4666.15Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME_PETIN2.097e-4564.39Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=... [more]
PME58_ARATH4.672e-4562.69Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME43_ARATH2.170e-4257.14Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME_MEDSA6.314e-4259.85Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]
PME46_ARATH6.981e-4154.55Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME23_ARATH1.191e-4058.96Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME_PRUPE2.031e-4056.82Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]
PME3_PHAVU2.653e-4056.06Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH13FM1 TF Citrus clementina cDNA clone KN0AAP8YH13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925320 ID=FC925320; Name=FC925320; organism=Citrus clementina; type=EST; length=410bp
GCTCGTGTGTTTTTTTTTGGTGATGGCATGTACAAGACCAGAATCACAGG
AAATTTGAACTATGTCGATGGCACACCCACGATGCATACCGCCACAGTCA
GTATTCTTGGAGAATTCTTCATGGCTAAGAACATTGGCTTTGAGAACTCA
GCAGGACCAGAGAAACATCAAGCAGTAGCCCTAAGGGTGGATGCCGATAT
GTCAATCTTCTACAACTGTTCAATGGACGGCTACCAAGACACACTCTACA
CCCACGCCAAGCGCCAGTACTACCGAGACTGCACCATCACCGGCACAATC
GACTTCATCTTCGGCGACTGCTCTGCCTTCTTTCAAAACTGCATAATCAT
CGTCCGAAAACCCCTAGACAACCATCATTGCATTGTCACTGCCCATGGCC
GCAATGTTTA
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