FC925328

Overview
NameFC925328
Unique NameFC925328
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length528
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14622 contig Ccv1_Contig14622:1..528. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.651e-46
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 353
            MTK TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_ORYSJ (60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.462e-46
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 353
            MTK TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.931e-45
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 350
            MTK TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 6.530e-45
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 353
            MTK TKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct:    1 MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.233e-44
Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 350
            M K TKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_BRARA (60S ribosomal protein L37a OS=Brassica rapa GN=RPL37A PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.043e-42
Identity = 84/92 (91.30%), Postives = 86/92 (93.48%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS-TIRRLREQTE 350
            M K TKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRS TIRRLREQ E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSHTIRRLREQIE 92          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_OSTLU (60S ribosomal protein L37a OS=Ostreococcus lucimarinus (strain CCE9901) GN=RPL37a PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.722e-37
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 350
            M K TKK GIVGKYGTRYGASLRK +KK EVSQHSK+FC+FCGKY +KRKAVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKVVKKQEVSQHSKFFCDFCGKYGMKRKAVGIWSCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_OSTTA (60S ribosomal protein L37a OS=Ostreococcus tauri GN=RPL37a PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.458e-36
Identity = 71/91 (78.02%), Postives = 78/91 (85.71%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 350
            M K TKK GIVGKYGTRYGASLRK +KK EVSQHSK+FC+FCGKY +KR+AVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKVVKKTEVSQHSKFFCDFCGKYGMKRQAVGIWCCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_CRYST (60S ribosomal protein L37a OS=Cryptochiton stelleri GN=RPL37A PE=3 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 5.186e-34
Identity = 67/92 (72.83%), Postives = 77/92 (83.70%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 353
            M K TKK GIVGKYGTRYGASLRK +KKME++QHSKY C+FCGK A+KR+AVGIWGCK C KV AGGA+  +T +AVTVRS +RRLRE  ES
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVAGGAWVYSTMAAVTVRSAVRRLREMKES 92          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_DICDI (60S ribosomal protein L37a OS=Dictyostelium discoideum GN=rpl37A PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.845e-31
Identity = 62/88 (70.45%), Postives = 72/88 (81.82%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 341
            M K TKK G+VGKYGTRYGASLRKQ+KKME++QH  Y C FCGK AV+R +VGIW C  C KV AGGA+T++TA+  TVRSTIRRLRE
Sbjct:    1 MAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGCRKVLAGGAWTMSTAAGATVRSTIRRLRE 88          
The following BLAST results are available for this feature:
BLAST of FC925328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL37A_GOSHI2.651e-4697.8360S ribosomal protein L37a OS=Gossypium hirsutum G... [more]
RL37A_ORYSJ3.462e-4695.6560S ribosomal protein L37a OS=Oryza sativa subsp. ... [more]
RL37A_PSEMZ2.931e-4595.6060S ribosomal protein L37a OS=Pseudotsuga menziesi... [more]
R37A1_ARATH6.530e-4593.48Putative 60S ribosomal protein L37a-1 OS=Arabidops... [more]
R37A2_ARATH4.233e-4492.3160S ribosomal protein L37a-2 OS=Arabidopsis thalia... [more]
RL37A_BRARA1.043e-4291.3060S ribosomal protein L37a OS=Brassica rapa GN=RPL... [more]
RL37A_OSTLU1.722e-3779.1260S ribosomal protein L37a OS=Ostreococcus lucimar... [more]
RL37A_OSTTA1.458e-3678.0260S ribosomal protein L37a OS=Ostreococcus tauri G... [more]
RL37A_CRYST5.186e-3472.8360S ribosomal protein L37a OS=Cryptochiton steller... [more]
RL37A_DICDI1.845e-3170.4560S ribosomal protein L37a OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YC15FM1 TF Citrus clementina cDNA clone KN0AAP11YC15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925328 ID=FC925328; Name=FC925328; organism=Citrus clementina; type=EST; length=528bp
GCTCGGCTACCCTTATCTCTCTCTATTCTCAGCAGCAGCAAGTGCGATTT
TTAGAGTTTCTGGTCTGCTTCTGCAAAATGACAAAGACGACCAAGAAGGC
AGGAATTGTTGGGAAGTATGGTACCCGTTATGGTGCCAGTCTGCGTAAGC
AGATTAAGAAGATGGAGGTCAGTCAACACAGCAAGTACTTCTGTGAATTC
TGTGGGAAGTATGCTGTGAAGAGGAAGGCTGTGGGAATCTGGGGTTGCAA
AGACTGTGGCAAGGTGAAAGCTGGAGGTGCTTACACTTTGAATACTGCTA
GTGCTGTGACCGTGAGGAGTACAATTCGGAGGCTGAGGGAACAGACCGAG
AGTTAATTTTGTTGCCAATCTATCTTTTTTTTCCTTTATTTGTGATAGGA
GTAATTCCTGGGGCAGGATTGTCTAAAACAATTTCTACGCTTGGATATAT
GGTTTAAAAAGTTTTGAATTTGAATCCCCTTATTAAACAGATTTGATGGA
CTTTTAGTTTAAAAAAAAAAAAAAAAAA
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